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AT5G53000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2A phosphatase associated protein of 46 kD
Curator
Summary (TAIR10)
PP2A-associated protein with a possible function in the chilling response
Computational
Description (TAIR10)
2A phosphatase associated protein of 46 kD (TAP46); CONTAINS InterPro DOMAIN/s: TAP42-like protein (InterPro:IPR007304); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20624eggNOG:ENOG41110HDeggNOG:KOG2830EMBL:AB018116
EMBL:AF133708EMBL:AY085863EMBL:BT004072EMBL:BT006150
EMBL:CP002688EnsemblPlants:AT5G53000EnsemblPlants:AT5G53000.1entrez:835379
GeneID:835379Genevisible:Q8LDQ4GO:GO:0005829GO:GO:0008601
GO:GO:0009409GO:GO:0009966GO:GO:0034047GO:GO:0035303
GO:GO:0051721Gramene:AT5G53000.1hmmpanther:PTHR10933hmmpanther:PTHR10933:SF9
HOGENOM:HOG000243643InParanoid:Q8LDQ4InterPro:IPR007304KEGG:ath:AT5G53000
ncoils:CoilOMA:ALENCEEPANTHER:PTHR10933PaxDb:Q8LDQ4
Pfam:PF04177Pfam:Q8LDQ4PhylomeDB:Q8LDQ4PIR:T52307
PRIDE:Q8LDQ4PRO:PR:Q8LDQ4ProteinModelPortal:Q8LDQ4Proteomes:UP000006548
RefSeq:NP_568783.1SMR:Q8LDQ4STRING:3702.AT5G53000.1TAIR:AT5G53000
tair10-symbols:TAP46UniGene:At.11435UniProt:Q8LDQ4
Coordinates (TAIR10) chr5:-:21485654..21487869
Molecular Weight (calculated) 45665.90 Da
IEP (calculated) 4.64
GRAVY (calculated) -0.72
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGLAMEEMP LSVLFEQARK IHLAASESGV DQDVVKKGCE MFQKCEDMIG KLALFSSNET KEDISTNNLK YLLVPYYLAE LTEKIIQEDR IQIVKASYAK
101: LKEFFSFCEA MELVPDEELE ASSRGGSGAP ADRRALKIAR FKRQKAAEAK LLEIKERKER RGRSTKASAL STPVESGEDD IPDDDSEEER EAWLSSINLA
201: ICKAIDLLEM LKREEEMLSA IKERQLKDGE GGFSRDALDD RTKKAETWHR DAAARIQYSK PAQPITCATF AQDVLEGRAS VSQGHEHKNQ PLIFGPASIV
301: GGPLSTERER MIAQVFQPSH RMPTMCIEDA GLTEMNIMND WQEQTKKAIE EATTSWYNDK PLRRKEEDEE DDDEDEEAVM KARAFDDWKD DNPRGAGNKK
401: LTPCG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)