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AT4G12610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAP74; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, transcription activator activity, DNA binding, catalytic activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, positive regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot, root, guard cell; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIF, alpha subunit (InterPro:IPR008851), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039); Has 33758 Blast hits to 21623 proteins in 1111 species: Archae - 118; Bacteria - 4904; Metazoa - 11974; Fungi - 5901; Plants - 2006; Viruses - 435; Other Eukaryotes - 8420 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT4G12610EnsemblPlants:AT4G12610.1entrez:826874hmmpanther:PTHR13011
Pfam:PF05793tair10-symbols:ATRAP74tair10-symbols:RAP74
Coordinates (TAIR10) chr4:+:7455565..7457465
Molecular Weight (calculated) 43865.70 Da
IEP (calculated) 4.40
GRAVY (calculated) -1.36
Length 400 amino acids
Sequence (TAIR10)
(BLAST)
001: MQNKEFVAIP AGSWYNFNKV AQYKQLTLEE AEEKMKNRRK TADGYQRWMM KAANNGPALF GEVDNEKESG GTSGGGGRGR KKSSGGDEEE GNVSDRGDED
101: EEEEASRKSR LGLNRKSNDD DDEEGPRGGD LDMDDDDIEK GDDWEHEEIF TDDDEAVGND PEEREDLLAP EIPAPPEIKQ DEDDEENEEE EGGLSKSGKE
201: LKKLLGKANG LDESDEDDDD DSDDEEETNY GTVTNSKQKE AAKEEPVDNA PAKPAPSGPP RGTPPAKPSK GKRKLNDGDS KKPSSSVQKK VKTENDPKSS
301: LKEERANTVS KSNTPTKAVK AEPASAPASS SSAATGPVTE DEIRAVLMEK KQVTTQDLVS RFKARLKTKE DKNAFANILR KISKIQKNAG SQNFVVLREK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)