AT1G31870.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 13303 Blast hits to 9618 proteins in 489 species: Archae - 8; Bacteria - 444; Metazoa - 7153; Fungi - 2294; Plants - 942; Viruses - 128; Other Eukaryotes - 2334 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:11437269..11439821 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64662.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.44 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.45 | ||||||||||||||||||||||||||||||||||||
| Length | 561 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGNQSLKDY LKKYESSDVV EKKKKKKKQK KPSKPEPRGV LVVDEDPVWQ KQVDPEEDEN EDDSAEETPL VDEDIEVKRM RRLEEIKARR AHNAIAEDGS 101: GWVTLPLNRE DTQSNISPPR RQRTRNDSPS PEPGPRRSVA DRVDTDMSPP RRRKRHNSPS PEPNRKHTKP VSLDSDMSPP RKRKARNDSP SPEPEAKYLS 201: EDLSPPRRRH VHSPSRESSR KRSDSVELDD DLSPPRRKRD LHGSPVSDVK KKSNDLSPPR RRRYHSPSPE PARRSSKSFG SNADLSPPGR NINMKDSQDS 301: DLSPQRKAAD LRRSSENVSR SSNFDSSPPR RPRRDSSPPQ ISKEQRKTGL ISGKDIGSEY RKKKEDEKLR FKNMDSELTG QNAEAVFRDK ITGKRISKEE 401: YLKSKQKKVI EKPKEIKLEW GKGLAQKREA EARLQELELE KDKPFARTRD DPELDQMMKE RVRFGDPMAH LVKKRKYETT LVDLGDDEEM KKSGFIIPQS 501: VPKHSWLTRR LEAASNRYGI KPGRHWDGVD RSNGTEKDLI KKTNERKATE IEAYLWSVAD M |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)