AT1G18950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DDT domain superfamily | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DDT domain superfamily; CONTAINS InterPro DOMAIN/s: DDT domain (InterPro:IPR004022); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25580.1); Has 20293 Blast hits to 13585 proteins in 823 species: Archae - 41; Bacteria - 1919; Metazoa - 8043; Fungi - 2539; Plants - 1031; Viruses - 220; Other Eukaryotes - 6500 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6546539..6551549 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86254.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.65 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.11 | ||||||||||||||||||||||||||||
| Length | 750 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSSSDIVPD RSPADDVAPV TDTKIPKEEP LTLRRTRPSR ACTVRAQQRL QELQAAERKL KPPKKEYKRE QHRRREEVVE EDEDSEDDDQ EDEENDGDDE 101: SNPKQCVAGG SSTKIITSLV PPPEPSQMPR WNLRSMWELA SVLNFLHVFR PLLKINAEFS AEEFETALLT PNDTLSDIHI PLLKAIPPVT RMALTRDTWV 201: TVLCRKIRDC WHWVAEGDLP IVALQGREIE VYKNLDPAIR VVILKALCDI RVEQEDIRSY IDNSLKTGVH LSVFRKDRVG GDSHGVNFWY EEDPLIGHRL 301: YREIRKAEVL KVKTKGSKIL PNITYQWETV ATNFDEFQDV SEKLLQSSSR IEVSLGKKLV KDMLPEIEKE HKRKEKLLKK QHRQALLLDN FVVVDGLAGR 401: SLRDRKPVRY TFDDYDKSIN DAIKITKKKH PSPEHPLHRR ESARLDALAN GRSTSSTHPT EPVNDTASGR SSDFADYDDF DEHRDESLDR RRRQRPQRYS 501: ATDFVETVSD NEVEFQSDDD IYGEAVYDEE YLKKRKQKKL SSGSEGDEEK GDEEYKWDED NAEYEEEEEE EEEEDSLSAS EEDSDEPRRA KKMPRRETKL 601: RSRSNDFRPG LRRSKRATRI DYQQYEFSDS DKEATGLAKR KRFVEPDEPS DETGNGDFTM GSQDSEENAN DPETKSGEEE EPRDVNDNAD TTNGKENNQL 701: NKSNGTTDQE EVEGVVGKRR YLDLNELAPV SGFDDGPSTV LKDDDKTDNS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)