AT5G38840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SMAD/FHA domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SMAD/FHA domain-containing protein ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: SMAD/FHA domain-containing protein (TAIR:AT5G47790.1); Has 18317 Blast hits to 13795 proteins in 1254 species: Archae - 157; Bacteria - 2798; Metazoa - 7417; Fungi - 1475; Plants - 704; Viruses - 54; Other Eukaryotes - 5712 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:15551329..15554846 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82123.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.76 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||||||
| Length | 735 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTSAMDPPP PRNPSHDIEP PEPNSTSISQ SDETSTMNPP PPRNPNPPDL KTTEVVVEPE PIEESKDDSV TVDADKPVRP RTVKQNPVPY TIPEWSGPPC 101: HQFQLEVLKE GAIVEKLDVY KKGAYLFGRD GICDFALEHP SISRFHAVIQ YKRSGAAYIF DLGSTHGTTV NKNKVDKKVF VDLNVGDVIR FGGSTRLYIF 201: QGPSDLMPPE KDLQLIREAK MRMEMSEREA SLRRARQQAS MADGVSWGMG EDAIEEEEDD VEEITWQTYS GELTPKQEKT KEKVLKRLEK IGHMKKEVAA 301: IRAKDISQGG LTQGQQTQIA RNEQRTAELL EELENLEETL NDSIRESLGA KTGRKPTHGK KKGIVEDEED LSSDEDDFYD RTQKKPSTKK GSENQTVETV 401: DSLVDKRDNV LKEIEAKNEQ LLTEKSKMET ENVTEVTSGD SLDALDAYMT GLSTTLVQDK TAQIQQELST LQSELSRILY LLKIADPTGE EVKKRELKSQ 501: ELKIKKSETP SVEKKINIPL KQADPNEHKE KEVAKDLVDS ENKPEVENKA SETAEEKKTT VYVPSKPQWL GSAANKAIIE EKNPEIVAAT TDSTEDADGF 601: VDYKNRKNIA LTATAGVEVV TGLIIRKRKQ EDKSEEDDDS KEKQAEVMAQ DAVALLLKHS VGHHVNEEDK ELSKQEENNQ GSGQSKTKKK KKTAKKVVGP 701: DKPEYLDETI DYDSWVPPAG QSGDGRTSLN DRLGY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)