AT1G80810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tudor/PWWP/MBT superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 103106 Blast hits to 54195 proteins in 2472 species: Archae - 625; Bacteria - 9047; Metazoa - 41139; Fungi - 13239; Plants - 5738; Viruses - 1077; Other Eukaryotes - 32241 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30365575..30368898 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87845.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.96 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.03 | ||||||||||||||||||||||||||||||||
| Length | 773 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQSALIPSRN ALVSVDLLSH PDSDVRVSVV SCLTEIVRIT APETPYSDDL MKEIFRLTIE AFEKLADASS RSYKKAEFVL DNVAKVKSCL VMLDLECYDL 101: ILQMFRNFFK FIRSDHPQLV FSSMELIMIA IIDETEQVST DLLDSLLATV KKENQNVSPM SWSLAEKVLS RCARKLKPYI IEALKSRGTS LDMYSPVVSS 201: ICQSVFNTPK VHSPVNTKEH EEKLDLGHSR KENLSKSSSK RPARHETRGI NEKEKVRNGN KSSLLKQSLK QVRSESTDAE ITGKRGRKPN SLMNPEDYDI 301: SWLSGKRDPL KTSSNKKIQK KGSGGVSSLG KVPAKKTPLP KENSPATSSR SLTGSLKRSR VKMDESDYDS DSLSSPRLKK LASCFRDEEP NQEDDRKIGN 401: SSKQTRSKNG LEKSQKTAKK KPVVEAKIVN SSGKRLSARS VAKRRNLERA PLDTLVPQSS KRKKMVSQVA ARQLANESEE ETPKSHPTRR RTVRKEVSDG 501: FGEDLVGKRV NIWWPLDKTF YEGVIDSYCT RKKMHRVIYS DGDSEELNLT EERWELLEDD TSADEDKEID LPESIPLSDI MQRQKVKKSK NVAVSVEPTS 601: SSGVRSSSRT LMKKDCGKRL NKQVEKTREG KNLRSLKELN AETDRTAEEQ EVSLEAESDD RSEEQEYEDD CSDKKEQSQD KGVEAETKEE EKQYPNSEGE 701: SEGEDSESEE EPKWRETDDM EDDEEEEEEE IDHMEDEAEE EKEEVDDKEA SANMSEIEKE EEEEEEDEEK RKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)