AT4G08310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ (InterPro:IPR019098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44780.2); Has 53711 Blast hits to 33687 proteins in 1618 species: Archae - 142; Bacteria - 4400; Metazoa - 24303; Fungi - 6688; Plants - 2484; Viruses - 449; Other Eukaryotes - 15245 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:5249047..5252139 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56238.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.60 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.24 | ||||||||||||||||||||||||||||||||
| Length | 504 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDGDSTTTS AMEISGDKID LKDGEATTPP KTDIESQILA AMQSRVTYLR DKADNFTFEG VRRLLEEDLK LEKHALDVHK SFVKQHLVQC LAGAENDETS 101: ENSLETEKKD DVTPVKEAAE LSKEHTTKKD GKEDMTGDDE KTKDSPVMGL LTEENTSKSV AEQTKDEDKE VLQSDIKKAL RKRSSYIKAN SEKITMGLLR 201: RLLEQDLKLE KYSLDPYKKF INGELDEILQ AHEATQSSTK AQRKPVSKKV KSTPAKNSDS EEMFDSDGED EEEDKEVAVK KKMAEKRKLS KSEGTGKRKR 301: EKEKPASAKK TKQTDSQSDS DAGEKAPSSE KSVKKPETPT TGYGKRVEHL KSIIKSCGMS ISPSVYRKAK QAPEEKREEI LIKELKELLA KEGLSANPSE 401: KEIKEVKKRK ERTKELEGID TSNIVSSSRR RSSASFVPPP KPIKAEESES DDSEDSENEE DEDEEVVVEE EEEEEDEGGS EDGGEGSQNE GELKTEDGGE 501: EESE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)