AT2G16860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GCIP-interacting family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GCIP-interacting family protein; CONTAINS InterPro DOMAIN/s: mRNA splicing factor SYF2 (InterPro:IPR013260); Has 2586 Blast hits to 2013 proteins in 293 species: Archae - 27; Bacteria - 123; Metazoa - 700; Fungi - 265; Plants - 138; Viruses - 7; Other Eukaryotes - 1326 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7304139..7305959 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35172.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.39 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.36 | ||||||||||||||||||||||||||||||||
| Length | 298 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSERRVHPD CINASNPYHE CVEYCFKKIA EAKARFEKQN TGLAKVHEQT REPLDDKRIE EDSSEEEEEE EDNQEPQVDV TQLTGRQKKL FELRLKMNEA 101: RKSNQTDVGS EKKKMEAPTE TKGISKQKWL EGRKKKIGKL LDANGLDMTQ AYMLDTQEAA ESKYKKWEKE PTPAGWDVFN QKTLYNAYKK RTKNIQVDLE 201: EYNRMRAADP EFYREASSLQ YGKAPKTSQD KIDKMAKELL DREQKRQEFS RRRKFREEKD IDSINDRNEH FNKKIERAFG KYTLEIKNNL ERGTALPD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)