AT5G08420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding KH domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); Has 2263 Blast hits to 1799 proteins in 332 species: Archae - 149; Bacteria - 48; Metazoa - 634; Fungi - 309; Plants - 96; Viruses - 0; Other Eukaryotes - 1027 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2713555..2716064 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45325.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.17 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.05 | ||||||||||||||||||||||||||||||||||||
| Length | 391 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEVEEIAHE EQNIEKREKK KGKHEKPKPW DDDPNIDRWT IEKFDPAWNP TGMTETSTFS TLFPQYREKY LQECWPRVES ALKEYGVACK LNLVEGSMTV 101: STTRKTRDPY IIVKARDLIK LLSRSVPAPQ AIKILEDEVQ CDIIKIGNLV RNKERFVKRR QRLVGPNSST LKALEILTNC YILVQGSTVA AMGPFKGLKQ 201: LRRIVEDCVQ NIMHPVYHIK TLMMKKELEK DPALANESWD RFLPTFRKKN VKQKKPKSKE KKPYTPFPPP QPPSKIDMQL ESGEYFMSDK KKSEKKWQEK 301: QEKQSEKSTE NKRKRDASFL PPEEPMNNNS NANKSEDGKN DITELTNSLK SKTKELKKQK KTHERVNAEE YIAGPSSSAD KSSKKSKKIR D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)