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AT2G20280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 6263 Blast hits to 4194 proteins in 354 species: Archae - 14; Bacteria - 176; Metazoa - 2274; Fungi - 740; Plants - 301; Viruses - 209; Other Eukaryotes - 2549 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5252eggNOG:KOG1763EMBL:AC006569EMBL:CP002685
EnsemblPlants:AT2G20280EnsemblPlants:AT2G20280.1entrez:816547GeneID:816547
Genevisible:Q9SK74GO:GO:0003677GO:GO:0046872Gramene:AT2G20280.1
hmmpanther:PTHR12681hmmpanther:PTHR12681:SF4HOGENOM:HOG000177574InParanoid:Q9SK74
InterPro:IPR000571InterPro:IPR032378KEGG:ath:AT2G20280ncoils:Coil
OMA:NLYEDTRPaxDb:Q9SK74Pfam:PF16543Pfam:Q9SK74
Pfscan:PS50103PhylomeDB:Q9SK74PIR:C84587PRIDE:Q9SK74
PRO:PR:Q9SK74PROSITE:PS50103ProteinModelPortal:Q9SK74Proteomes:UP000006548
RefSeq:NP_179618.1SMART:SM00356SMR:Q9SK74STRING:3702.AT2G20280.1
SUPFAM:SSF90229TAIR:AT2G20280UniGene:At.39718UniProt:Q9SK74
Coordinates (TAIR10) chr2:-:8740054..8742349
Molecular Weight (calculated) 42391.10 Da
IEP (calculated) 4.68
GRAVY (calculated) -1.19
Length 371 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPKQQPKAD LAKKQKQVED KTFGLKNKNK SKNVQKYVQS LKQSVQPKPD ATKAAAKKKK EEEKAREQEL NELFKVAISQ PKVPVGVDPK SILCEFFKAG
101: QCQKGFKCKF SHDLNIQRKG EKIDIYSDTR DEDGDMDEWD QETLEKVVES KKNEYNQNKP TDIVCKYFLD AVEKKQYGWF WSCPNGGKEC HYRHALPPGY
201: VLKSQMKALL EEESSKKLAV EDEIENERAK LQTATQMTPA LFMEWKRKKI AERDAGLAAS QAERAKNDRM SGRELFLSNA SLFVDDAEAC EEYEREREQE
301: ETEQKAKNKE AEAGTSKSSG DAEQSSKEVN EEEEDDDDDD DDLDMDELDE LEASLSKTSI QIREPNDEGS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)