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AT5G22010.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : replication factor C1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
replication factor C1 (RFC1); FUNCTIONS IN: DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex, intracellular; CONTAINS InterPro DOMAIN/s: DNA replication factor RFC1, C-terminal (InterPro:IPR013725), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA replication factor C, large subunit (InterPro:IPR012178), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G04730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5275eggNOG:ENOG410IPR8EMBL:AL589883EMBL:BT014965
EMBL:CP002688EnsemblPlants:AT5G22010EnsemblPlants:AT5G22010.1entrez:832261
Gene3D:3.40.50.10190Gene3D:3.40.50.300GeneID:832261GO:GO:0000003
GO:GO:0000712GO:GO:0003677GO:GO:0003689GO:GO:0005524
GO:GO:0005634GO:GO:0005663GO:GO:0006260GO:GO:0006281
GO:GO:0006974GO:GO:0007126GO:GO:0009737GO:GO:0031935
GO:GO:0051570Gramene:AT5G22010.1hmmpanther:PTHR23389hmmpanther:PTHR23389:SF10
HOGENOM:HOG000085054InParanoid:Q9C587InterPro:IPR001357InterPro:IPR003593
InterPro:IPR003959InterPro:IPR008921InterPro:IPR012178InterPro:IPR013725
InterPro:IPR027417iPTMnet:Q9C587KEGG:ath:AT5G22010KO:K10754
ncoils:CoilOMA:AHSHILAPaxDb:Q9C587Pfam:PF00004
Pfam:PF00533Pfam:PF08519Pfam:Q9C587Pfscan:PS50172
PhylomeDB:Q9C587PIRSF:PIRSF036578PRIDE:Q9C587PRO:PR:Q9C587
PROSITE:PS50172ProteinModelPortal:Q9C587Proteomes:UP000006548Reactome:R-ATH-110312
Reactome:R-ATH-110314Reactome:R-ATH-110320Reactome:R-ATH-174411Reactome:R-ATH-5651801
Reactome:R-ATH-5655862Reactome:R-ATH-5656121Reactome:R-ATH-5656169Reactome:R-ATH-5696397
Reactome:R-ATH-5696400Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-69091
RefSeq:NP_680188.1SMART:SM00292SMART:SM00382SMR:Q9C587
STRING:3702.AT5G22010.1SUPFAM:SSF48019SUPFAM:SSF52113SUPFAM:SSF52540
TAIR:AT5G22010tair10-symbols:AtRFC1tair10-symbols:RFC1UniGene:At.45635
UniProt:Q9C587
Coordinates (TAIR10) chr5:-:7280632..7287037
Molecular Weight (calculated) 104384.00 Da
IEP (calculated) 9.90
GRAVY (calculated) -0.75
Length 956 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDIRKWFMK AHEKGNGSAP KSTSSKAGPV KNAAETAPIK SEQASEDLET ADRRKTSKYF GKDKTKVKDE KEVEAIPAKR KLKTESDDLV KPRPRKVTKV
101: VDDDDDDFDV PISRKTRDTT PSKKLKSGSG RGIASKTVDN DDDDDGEDKE TPLKSAGRGR GGRAAPGAST GGRGRGGGRG GFMNFGERKD PPHKGEKEVP
201: EGTPDCLAGL TFVISGTLDS LEREEAEDLI KRHGGRITGS VSKKTTYLLC DEDIGGRKSE KAKELGTKFL TEDGLFDIIR SSKPVKKSLP ERSNKGTEKI
301: CAPPKTSPQK EETRGKPLAK SSPKKVPPAK GKNKIIETSL PWTEKYRPKV PNEIVGNQSL VTQLHNWLSH WHDQFGGTGS KGKGKKLNDA GSKKAVLLSG
401: TPGIGKTTSA KLVSQMLGFQ AVEVNASDSR GKANSNIAKG IGGSNANSVK ELVNNEAMAA NFDRSKHPKT VLIMDEVDGM SAGDRGGVAD LIASIKISKI
501: PIICICNDRY SQKLKSLVNY CLPLNYRKPT KQQMAKRLMH IAKAEGLEIN EIALEELAER VNGDIRLAVN QLQYMSLSMS VIKYDDIRQR LLSSAKDEDI
601: SPFTAVDKLF GYNGGKLRMD ERIDLSMSDP DLVPLLIQEN YLNYRPSGKD EAKRMDLLAR AAESIADGDI INVQIRRYRQ WQLSQSCCVA SSILPASLLH
701: GSREVLEQGE RNFNRFGGWL GKNSTAGKNR RLMEDLHVHV LASRESSAGR ETLRVDYLPL LLSRLTSPLQ TLPKDEAVSE VVDFMNSYSI SQEDFDTILE
801: LGKFKGRENP MEGVPPPVKA ALTKKYNEMN KTRMVRVADM VQLPGVKKAP KKRIAAMLEP TVDSLRDEDG EPLADNEEGN GSDAEEDSEE ATDGEKLESN
901: LKNLNARGIQ VELDLKGAGS SGSRKAAGKG RGRGKAADTS AEKKATGRGS GAKRKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)