AT5G08630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DDT domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DDT domain-containing protein; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), DDT domain (InterPro:IPR004022), DDT domain, subgroup (InterPro:IPR018500), WSTF/Acf1/Cbp146 (InterPro:IPR013136); Has 7496 Blast hits to 4698 proteins in 418 species: Archae - 4; Bacteria - 337; Metazoa - 2683; Fungi - 719; Plants - 380; Viruses - 89; Other Eukaryotes - 3284 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2798575..2802138 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 84403.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.43 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||||||||||
| Length | 723 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPLLKKKSHK LLEPPKNLEP QELVYQVRLT NEIFRDYQLY LKRLNLYRNR VWTCKSTGKT SLSYEEALDS EKLAGKKVQT LPRELVAPAL RIIQFSTLSL 101: KDLADKIATE LQDCFFPGAE LYGERDGELH PCKILRIVSD GDSKPQYEVG FLDKNKEVDD NTVLFGEDLS WKKFPFSRNF LKSFIRDSTC HSIPWVVNDY 201: LAKAHEITRK IPKELQNKYV FQNGELVQQR KQEDKTGREN RKRKRAENGK HVAEETDREV NGSEEEAINY PIEDLLLPPD PDVTQRPSPS RDFSVPMDCV 301: GDLLMVWDFC TSFGRQLHLW RFSLEDFENA VCHKESNLVL IMEVHASLFR FLINERGDSF KALQRRSRKS KITLITWAEY LCDFLESVNT PDLCFDVGTI 401: KRGHYGLLDP NVKLKILREL VNHITETGMF KGEIDELVEQ RHALGAARRE EALAEARQIR EEKERSKTGE EANGVLDNNR LEKKKNSAQV LESSEDSKKN 501: ESTAGGSKME NGSVSSENIE KSEKRLIGNV YLRKHKRQMT DTKIEPKEEE EDEKAEEDEE EKGFSVKKQE VKSASEDEKG TFERRGPEQR RQYYEREMEK 601: IVIRTNPLGK DRDYNRYWWF RSNGRIFVEN SDSEEWGYYT AKEELDALMG SLNRKGEREL SLYTQLEIFY DRICSTLQKR TKDIAHNIEM EEAVVRRSTR 701: VRAPLHENPA SAFLRYVNKW KED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)