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AT4G11560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : bromo-adjacent homology (BAH) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: Bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT2G25120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQP1eggNOG:KOG1886EMBL:AY080679EMBL:AY133747
EMBL:CP002687EnsemblPlants:AT4G11560EnsemblPlants:AT4G11560.1entrez:826760
Gene3D:1.10.472.30GeneID:826760GO:GO:0003682GO:GO:0006351
Gramene:AT4G11560.1hmmpanther:PTHR15141hmmpanther:PTHR15141:SF38HOGENOM:HOG000237923
InterPro:IPR001025InterPro:IPR003618KEGG:ath:AT4G11560ncoils:Coil
OMA:FEYDGNRPfam:PF01426Pfam:PF07500Pfscan:PS51038
Pfscan:PS51321PhylomeDB:Q8RXT5PROSITE:PS51038PROSITE:PS51321
Proteomes:UP000006548RefSeq:NP_192893.2SMART:SM00439SMART:SM00510
SUPFAM:0037100SUPFAM:SSF46942TAIR:AT4G11560UniGene:At.44003
UniProt:Q8RXT5
Coordinates (TAIR10) chr4:-:7000095..7003445
Molecular Weight (calculated) 66461.20 Da
IEP (calculated) 4.72
GRAVY (calculated) -0.99
Length 587 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLSRRFAQV SSDEEDDVPI TRSKGRNSAS PEESLGKRRK RKTVKLYEDF EEKEADRKKK RKGNKEDEDM AEGDDDQAEE ETNPEAEEEE DEEEEEKPDD
101: ACPVGDSVNV TGKGKGKRTH FNQFAYDGNT YDLEVPVLLV PEDKSQKPYV AIIKDITQTK DGSMMILGQW FYRPEEAEKR GGGNWQSSDT RELFYSFHRD
201: EVPAESVMHR CVVYFVPAHK QLPKRKNNPG FIVRKVYDTV EKKLWKLTDK DYEDSKQREI DVLVKKTMNV LGDLPDLESE DMLVDQENVL KAKRSFRKVN
301: ISPVDVRREE DASLKAETPG SGAGISSEHY AILEKFDSLT GDAHRDKCLG KLLEAVQHIC YIPENKQAGD EAKVGSDASH LEQDEKDTKP ENGKDEKFLW
401: PDAAVPQVCA LENASHASLA SDFQKYNQKM RTLVFNLKNT ALLARRLLNG ELEPATILNM SPTELKEGLT ADETTKKEPD DADRMQMTSV RCSRCSQLTV
501: GLRDIIQAGH GDRYQLECVD CGYSWYASRD EVSTLTIVTD KPAQGTEKED IEKNLTSPRE TNKPKDEALK TNDSNADNNP EASKKPE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)