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AT5G21990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.962
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-type peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT5G48570.1); Has 3652 Blast hits to 3437 proteins in 299 species: Archae - 17; Bacteria - 74; Metazoa - 1859; Fungi - 377; Plants - 620; Viruses - 0; Other Eukaryotes - 705 (source: NCBI BLink).
Protein Annotations
BioGrid:17534eggNOG:ENOG410IQSZeggNOG:ENOG410ZI5XEMBL:AK118755
EMBL:AL589883EMBL:BT053758EMBL:CP002688EnsemblPlants:AT5G21990
EnsemblPlants:AT5G21990.1entrez:832259Gene3D:1.25.40.10GeneID:832259
GO:GO:0000413GO:GO:0003755GO:GO:0005528GO:GO:0005789
GO:GO:0005829GO:GO:0009707GO:GO:0015031GO:GO:0016021
GO:GO:0046967GO:GO:0061077Gramene:AT5G21990.1hmmpanther:PTHR10516
hmmpanther:PTHR10516:SF322HOGENOM:HOG000240818InParanoid:B7ZWR6IntAct:B7ZWR6
InterPro:IPR001440InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734
InterPro:IPR023566iPTMnet:B7ZWR6KEGG:ath:AT5G21990MINT:MINT-8375685
OMA:TYQINAAPANTHER:PTHR10516PaxDb:B7ZWR6Pfam:B7ZWR6
Pfam:PF00515Pfscan:PS50005Pfscan:PS50293PhylomeDB:B7ZWR6
PRIDE:B7ZWR6PRO:PR:B7ZWR6PROSITE:PS50005PROSITE:PS50293
ProteinModelPortal:B7ZWR6Proteomes:UP000006548RefSeq:NP_680187.2SMART:SM00028
SMR:B7ZWR6STRING:3702.AT5G21990.1SUPFAM:SSF48452TAIR:AT5G21990
tair10-symbols:TPR7TMHMM:TMhelixUniGene:At.20053UniProt:B7ZWR6
Coordinates (TAIR10) chr5:+:7273395..7276318
Molecular Weight (calculated) 60760.70 Da
IEP (calculated) 5.63
GRAVY (calculated) -0.57
Length 554 amino acids
Sequence (TAIR10)
(BLAST)
001: MFNGLMDPEM IRLAQDQMSR MTPADFARIQ QQMMSNPDLM NMATESMKNM RPEDLKQAAE QLKHTRPEDM AEISEKMAKA SPEDIAAMRA HADAQFTYQI
101: NAAQMLKKQG NELHSRGNFS DAAEKYLRAK NNLKEIPSSK GGAILLACSL NLMSCYLKTN QHEECIKEGS EVLGYDARNV KALYRRGQAY RDLGLFEDAV
201: SDLSKAHEVS PEDETIADVL RDVKERLAVE GPGKASRGVV IEDITEENNV TSGENKKPSK EANGHAQGVK TDVDGLQALR DNPEAIRTFQ NFISKTDPDT
301: LAALSGGKAG DMSPDMFKTA SSMIGKMSPE EIQKMVQTAS SFKGDNPFAP TAPSTENGFT PTPDMLKLAS DMMGKMSPEE RERMFNMASS LKANAPASTS
401: YGNAEASEPR ESLGASGSSS GNSFVAPRSG FEPSIPSAPP ADLQEQMRNQ MKDPAMRQMF TSMIKNMNPE MMASMSEQFG MKLSQEDAAK AQQAMASLSP
501: DALEKMMRWA DRAQTGMEKA KKAKKWLFGK GGLIFAILML VLAMVLHRLG YIGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)