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AT4G30600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21433285 (2011): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : signal recognition particle receptor alpha subunit family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
signal recognition particle receptor alpha subunit family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, signal recognition particle binding, GTP binding, GTPase activity, nucleotide binding; INVOLVED IN: intracellular protein transport, protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: endoplasmic reticulum, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle receptor, alpha subunit, N-terminal (InterPro:IPR007222), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa subunit (TAIR:AT1G15310.1); Has 16825 Blast hits to 16740 proteins in 2884 species: Archae - 472; Bacteria - 10592; Metazoa - 551; Fungi - 433; Plants - 279; Viruses - 3; Other Eukaryotes - 4495 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0552eggNOG:KOG0781EMBL:AL161577EMBL:AY065066
EMBL:AY133612EMBL:CP002687EnsemblPlants:AT4G30600EnsemblPlants:AT4G30600.1
entrez:829183Gene3D:3.40.50.300GeneID:829183GO:GO:0003924
GO:GO:0005047GO:GO:0005525GO:GO:0005783GO:GO:0005785
GO:GO:0006614Gramene:AT4G30600.1hmmpanther:PTHR11564HOGENOM:HOG000201671
InterPro:IPR000897InterPro:IPR003593InterPro:IPR007222InterPro:IPR011012
InterPro:IPR013822InterPro:IPR027417KEGG:ath:AT4G30600KO:K13431
OMA:ARPYVMSPfam:PF00448Pfam:PF02881Pfam:PF04086
PhylomeDB:Q9M0A0PIR:A85358PROSITE:PS00300Proteomes:UP000006548
RefSeq:NP_194789.1scanprosite:PS00300SMART:SM00382SMART:SM00962
SMART:SM00963SMR:Q9M0A0STRING:3702.AT4G30600.1SUPFAM:SSF47364
SUPFAM:SSF52540SUPFAM:SSF64356TAIR:AT4G30600UniGene:At.4581
UniProt:Q9M0A0
Coordinates (TAIR10) chr4:-:14938142..14940600
Molecular Weight (calculated) 69576.80 Da
IEP (calculated) 7.56
GRAVY (calculated) -0.45
Length 634 amino acids
Sequence (TAIR10)
(BLAST)
001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)