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AT4G23850.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
golgi 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AMP-dependent synthetase and ligase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
long-chain acyl-CoA synthetase 4 (LACS4); FUNCTIONS IN: catalytic activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT4G11030.1); Has 52797 Blast hits to 49694 proteins in 3271 species: Archae - 966; Bacteria - 33480; Metazoa - 2301; Fungi - 1946; Plants - 2035; Viruses - 1; Other Eukaryotes - 12068 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G23850-MONOMERBioCyc:MetaCyc:AT4G23850-MONOMERBioGrid:13773EC:6.2.1.3
eggNOG:COG1022eggNOG:KOG1256EMBL:AF503754EMBL:AL078468
EMBL:AL161560EMBL:AY049239EMBL:CP002687EnsemblPlants:AT4G23850
EnsemblPlants:AT4G23850.1entrez:828484GeneID:828484Genevisible:Q9T0A0
GO:GO:0001676GO:GO:0004467GO:GO:0005524GO:GO:0005794
GO:GO:0005886GO:GO:0006631Gramene:AT4G23850.1gramene_pathway:2.7.8.11
gramene_pathway:6.2.1.3gramene_pathway:PHOSLIPSYN2-PWYgramene_pathway:PWY-5143gramene_pathway:PWY-5995
hmmpanther:PTHR24096hmmpanther:PTHR24096:SF187HOGENOM:HOG000159459InParanoid:Q9T0A0
InterPro:IPR000873InterPro:IPR020845iPTMnet:Q9T0A0KEGG:ath:AT4G23850
KO:K01897OMA:VIEECFIPaxDb:Q9T0A0Pfam:PF00501
Pfam:Q9T0A0PhylomeDB:Q9T0A0PIR:T08904PRIDE:Q9T0A0
PRO:PR:Q9T0A0PROSITE:PS00455ProteinModelPortal:Q9T0A0Proteomes:UP000006548
RefSeq:NP_194116.1SABIO-RK:Q9T0A0scanprosite:PS00455SMR:Q9T0A0
STRING:3702.AT4G23850.1SUPFAM:SSF56801TAIR:AT4G23850tair10-symbols:LACS4
UniGene:At.3384UniPathway:UPA00199UniProt:Q9T0A0
Coordinates (TAIR10) chr4:-:12403720..12408263
Molecular Weight (calculated) 74511.90 Da
IEP (calculated) 5.63
GRAVY (calculated) -0.14
Length 666 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQQKKYIFQ VEEGKEGSDG RPSVGPVYRS IFAKDGFPDP IEGMDSCWDV FRMSVEKYPN NPMLGRREIV DGKPGKYVWQ TYQEVYDIVM KLGNSLRSVG
101: VKDEAKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA DAVEFIISHS EVSIVFVEEK KISELFKTCP NSTEYMKTVV SFGGVSREQK EEAETFGLVI
201: YAWDEFLKLG EGKQYDLPIK KKSDICTIMY TSGTTGDPKG VMISNESIVT LIAGVIRLLK SANEALTVKD VYLSYLPLAH IFDRVIEECF IQHGAAIGFW
301: RGDVKLLIED LAELKPTIFC AVPRVLDRVY SGLQKKLSDG GFLKKFIFDS AFSYKFGYMK KGQSHVEASP LFDKLVFSKV KQGLGGNVRI ILSGAAPLAS
401: HVESFLRVVA CCHVLQGYGL TESCAGTFVS LPDELGMLGT VGPPVPNVDI RLESVPEMEY DALASTARGE ICIRGKTLFS GYYKREDLTK EVLIDGWLHT
501: GDVGEWQPDG SMKIIDRKKN IFKLSQGEYV AVENIENIYG EVQAVDSVWV YGNSFESFLI AIANPNQHIL ERWAAENGVS GDYDALCQNE KAKEFILGEL
601: VKMAKEKKMK GFEIIKAIHL DPVPFDMERD LLTPTFKKKR PQLLKYYQSV IDEMYKTINA KFASRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)