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AT3G13870.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 0.500
golgi 0.500
ASURE: endoplasmic reticulum,golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Root hair defective 3 GTP-binding protein (RHD3)
Curator
Summary (TAIR10)
required for regulated cell expansion and normal root hair development. Encodes an evolutionarily conserved protein with putative GTP-binding motifs that is implicated in the control of vesicle trafficking between the endoplasmic reticulum and the Golgi compartments.
Computational
Description (TAIR10)
ROOT HAIR DEFECTIVE 3 (RHD3); FUNCTIONS IN: GTP binding; INVOLVED IN: root epidermal cell differentiation, plant-type cell wall biogenesis, ER to Golgi vesicle-mediated transport, actin cytoskeleton organization, cell tip growth; LOCATED IN: endoplasmic reticulum, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: Root hair defective 3 GTP-binding protein (RHD3) (TAIR:AT1G72960.1); Has 563 Blast hits to 546 proteins in 189 species: Archae - 0; Bacteria - 2; Metazoa - 79; Fungi - 191; Plants - 135; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).
Protein Annotations
EC:3.6.5.-eggNOG:ENOG410XPVJeggNOG:KOG2203EMBL:AB028610
EMBL:AK230324EMBL:AY092988EMBL:AY128801EMBL:CP002686
EMBL:U86081EnsemblPlants:AT3G13870EnsemblPlants:AT3G13870.1entrez:820600
Gene3D:3.40.50.300GeneID:820600Genevisible:P93042GO:GO:0000139
GO:GO:0003924GO:GO:0005525GO:GO:0005737GO:GO:0005774
GO:GO:0005783GO:GO:0005789GO:GO:0005886GO:GO:0006888
GO:GO:0009832GO:GO:0009932GO:GO:0010053GO:GO:0016021
GO:GO:0030036HAMAP:MF_03109hmmpanther:PTHR11649hmmpanther:PTHR11649:SF62
HOGENOM:HOG000029819InParanoid:P93042InterPro:IPR008803InterPro:IPR027417
InterPro:IPR030386iPTMnet:P93042KEGG:ath:AT3G13870ncoils:Coil
OMA:IRAITKMPaxDb:P93042Pfam:P93042Pfam:PF05879
Pfscan:PS51715PhylomeDB:P93042PRIDE:P93042PRO:PR:P93042
PROSITE:PS51715ProteinModelPortal:P93042Proteomes:UP000006548RefSeq:NP_188003.1
RefSeq:NP_974308.1SMR:P93042STRING:3702.AT3G13870.1SUPFAM:SSF52540
TAIR:AT3G13870tair10-symbols:RHD3UniGene:At.23248UniGene:At.25164
UniProt:P93042
Coordinates (TAIR10) chr3:-:4565762..4571109
Molecular Weight (calculated) 89097.10 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.29
Length 802 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAACSTQLI DGDGVFNVSG VDHFIKEVKL DECGLSYAVV SIMGPQSSGK STLLNHLFGT NFREMDAFRG RSQTTKGIWI ARCAGIEPCT VVMDLEGTDG
101: RERGEDDTAF EKQSALFALA VSDIVLINMW CHDIGREQAA NKPLLKTVFQ VMMRLFSPRK TTLMFVIRDK TRTPLENLEP VLREDIQKIW DSVPKPQAHK
201: ETPLSDFFNV EVVALSSYEE KEEQFKEQVY NLRQRFFQSV APGGLAGDRR GVVPANAFAF SAKQMWQVIK DNKDLDLPAH KVMVATVRCE EIANEKFSSF
301: IANENWRELE EAVQSGPVSG FGRKLSSILQ ASLSEYDTEA TYFEESVRSS KRQQLQEKLL QLVQPTFQDV LGHLRAGALE NFKNAFEKAL DAGEGFSSSA
401: KSCAQSCISK FDKGCEEAVI EQAKWDTSKT REKLERDIEA HISSVRTAKL AELTTLYESK LNVALSGPVE ALLDGANDET WPAIRKLLRR EGELAVYGLS
501: NALSGFEMDE ETRSKMLADL ENYARGIVET KAKEEAGRAM MRMKDRFATI FSHDSDSMPR VWTGKEDIRA ITKMARSASL KLLSVMAVIR LDDELDNIEK
601: TLTLALFNST GNNATSKSIS TIDSLASSTW EKVAPEKTLI TPVQCKSLWR QFKNETEYTV TQAISAQEAN RRNNNWLPPP WAILALVVLG FNEFMTLLRN
701: PLWLLVLFVG YLVSKALWVQ LNISGEFQNG VLPGLLSLST KFIPTVMNLL KKLAEEGQAP PTNSNQSMNS TAQSEVTTNG ESSSSSSSGS SPAKNVPIDT
801: SA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)