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AT2G16950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : transportin 1
Curator
Summary (TAIR10)
Nuclear import receptor for AtGRP7.
Computational
Description (TAIR10)
transportin 1 (TRN1); CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G16960.1); Has 1831 Blast hits to 1766 proteins in 228 species: Archae - 0; Bacteria - 2; Metazoa - 686; Fungi - 563; Plants - 278; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT2G16950EnsemblPlants:AT2G16950.1entrez:816198hmmpanther:PTHR10527
hmmpanther:PTHR10527:SF3Pfam:PF03810Pfam:PF13513Pfscan:PS50166
tair10-symbols:ATTRN1tair10-symbols:TRN1
Coordinates (TAIR10) chr2:+:7353939..7360637
Molecular Weight (calculated) 99641.00 Da
IEP (calculated) 4.56
GRAVY (calculated) 0.02
Length 895 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAVIWQAL YNSLDKYLQG LFVLANDPVP EVRKLVCAAF VHLTEVLPSS IEPHLRNVME YMLQVNRDPD EEVSLEACEF WSAYCDAQLP
301: PENLKEFLPR LIPVLLENMA YADDDESLLD AEEDESQPDR DQDLKPRFHT SRLHGSEDFD DDDDDSFNVW NLRKCSAAAI DVLSNVFGDE ILPALMPLIQ
401: KNLSASGDEA WKQREAAVLA LGAIAEGCMN GLYPHLSEIV AFLLPLLDDK FPLIRSISCW TLSRFGKYLI QESGNPKGYE QFEKVLMGLL RRLLDTNKRV
501: QEAACSAFAT VEEDAAEELV PHLGVILQHL MCAFGKYQRR NLRIVYDAIG TLADSVREEL NKPAYLEILM PPLVAKWQQL SNSDKDLFPL LECFTSISQA
601: LGVGFAPFAQ PVFQRCMDII QLQQLAKVNP ASAGAQYDRE FIVCSLDLLS GLAEGLGSGI ESLVQQSNLR DLLLNCCIDE AADVRQSAFA LMGDLARVFP
701: VYLQPRLLDF LEIASQQLSA NLNRENLSVA NNACWAIGEL AVKVRQEVSP IVAKVVSSLG LILQHGEGVN KALVENSAIT LGRLAWIRPD LVAPHMDHFM
801: KPWCMALSMV RDDIEKEDAF RGLCAVVKVN PSGGVSSLVF ICQAIASWHE IRSEDVQTEV SQVLNGYKHM LGNSWAECLS ALDPPVKERL ARYQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)