suba logo
AT5G20010.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAS-related nuclear protein-1
Curator
Summary (TAIR10)
A member of RAN GTPase gene family. Encodes a small soluble GTP-binding protein. Likely to be involved in nuclear translocation of proteins. May also be involved in cell cycle progression.
Computational
Description (TAIR10)
RAS-related nuclear protein-1 (RAN-1); FUNCTIONS IN: protein binding, GTP binding, GTPase activity; INVOLVED IN: response to cadmium ion, response to salt stress, protein import into nucleus; LOCATED IN: apoplast, cell wall, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753); BEST Arabidopsis thaliana protein match is: RAN GTPase 3 (TAIR:AT5G55190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G20010-MONOMERBioGrid:17399eggNOG:ENOG410XNRSeggNOG:KOG0096
EMBL:AF296836EMBL:AF428417EMBL:AY088774EMBL:AY125542
EMBL:CP002688EMBL:L16789EMBL:X97379EnsemblPlants:AT5G20010
EnsemblPlants:AT5G20010.1entrez:832123Gene3D:3.40.50.300GeneID:832123
Genevisible:P41916GO:GO:0003924GO:GO:0005525GO:GO:0005618
GO:GO:0005634GO:GO:0005794GO:GO:0005829GO:GO:0005886
GO:GO:0006606GO:GO:0007264GO:GO:0009651GO:GO:0046686
GO:GO:0048046Gramene:AT5G20010.1hmmpanther:PTHR24071hmmpanther:PTHR24071:SF7
HOGENOM:HOG000216664IntAct:P41916InterPro:IPR001806InterPro:IPR002041
InterPro:IPR005225InterPro:IPR027417iPTMnet:P41916KEGG:ath:AT5G20010
KO:K07936MINT:MINT-1163760OMA:KKNLQVCPaxDb:P41916
Pfam:P41916Pfam:PF00071Pfscan:PS51418PhylomeDB:P41916
PRIDE:P41916PRINTS:PR00627PRO:PR:P41916PROSITE:PS51418
ProteinModelPortal:P41916Proteomes:UP000006548Reactome:R-ATH-203927RefSeq:NP_197501.1
SMR:P41916STRING:3702.AT5G20010.1SUPFAM:SSF52540TAIR:AT5G20010
tair10-symbols:ATRAN1tair10-symbols:RAN-1tair10-symbols:RAN1TIGRfam:TIGR00231
TIGRFAMs:TIGR00231UniGene:At.18604UniGene:At.23000UniProt:P41916
Coordinates (TAIR10) chr5:+:6760364..6761747
Molecular Weight (calculated) 25277.10 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.44
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MALPNQQTVD YPSFKLVIVG DGGTGKTTFV KRHLTGEFEK KYEPTIGVEV HPLDFFTNCG KIRFYCWDTA GQEKFGGLRD GYYIHGQCAI IMFDVTARLT
101: YKNVPTWHRD LCRVCENIPI VLCGNKVDVK NRQVKAKQVT FHRKKNLQYY EISAKSNYNF EKPFLYLARK LAGDQNLHFV ETPALAPPEV HIDIADQQKN
201: EAELLQAAAQ PLPDDDDDIF E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)