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AT2G30060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pleckstrin homology (PH) domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pleckstrin homology (PH) domain superfamily protein; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: intracellular transport, protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) domain superfamily protein (TAIR:AT1G07140.1); Has 1493 Blast hits to 1181 proteins in 240 species: Archae - 0; Bacteria - 5; Metazoa - 818; Fungi - 349; Plants - 153; Viruses - 2; Other Eukaryotes - 166 (source: NCBI BLink).
Protein Annotations
BioGrid:2906eggNOG:COG5171eggNOG:KOG0864EMBL:AC004165
EMBL:AC004680EMBL:AY093099EMBL:BT020304EMBL:BT020473
EMBL:BT024607EMBL:CP002685EMBL:X97378EnsemblPlants:AT2G30060
EnsemblPlants:AT2G30060.1entrez:817557Gene3D:2.30.29.30GeneID:817557
Genevisible:Q8RWG8GO:GO:0005643GO:GO:0015031GO:GO:0046907
GO:GO:0051028Gramene:AT2G30060.1hmmpanther:PTHR23138hmmpanther:PTHR23138:SF93
HOGENOM:HOG000176323InParanoid:Q8RWG8IntAct:Q8RWG8InterPro:IPR000156
InterPro:IPR011993KEGG:ath:AT2G30060KO:K15306ncoils:Coil
OMA:CANHMISPaxDb:Q8RWG8Pfam:PF00638Pfam:Q8RWG8
Pfscan:PS50196PhylomeDB:Q8RWG8PIR:T00592PRIDE:Q8RWG8
PRO:PR:Q8RWG8PROSITE:PS50196ProteinModelPortal:Q8RWG8Proteomes:UP000006548
RefSeq:NP_180567.1SMART:SM00160SMR:Q8RWG8STRING:3702.AT2G30060.1
SUPFAM:SSF50729TAIR:AT2G30060UniGene:At.20964UniGene:At.67860
UniProt:Q8RWG8
Coordinates (TAIR10) chr2:+:12827035..12828551
Molecular Weight (calculated) 24390.20 Da
IEP (calculated) 4.53
GRAVY (calculated) -0.94
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MASISNEPER ENRDEEETGA NEDEDTGAQV APIVRLEEVA VTTGEEDEDT ILDLKSKLYR FDKDGSQWKE RGAGTVKFLK HRVSGKIRLV MRQSKTLKIC
101: ANHLVGSGMS VQEHAGNDKS CVWHARDFSD GELKDELFCI RFASVENCKA FMQKFKEVAE SEEEKEESKD ASDTAGLLEK LTVEEKESEK KPVEKAEENK
201: KSEAVEEKKT EESVPSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)