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AT1G23490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.739
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ADP-ribosylation factor 1
Curator
Summary (TAIR10)
Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. A member of ARF GTPase family. Arabidopsis has 21 known members, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
Computational
Description (TAIR10)
ADP-ribosylation factor 1 (ARF1); FUNCTIONS IN: protein binding, phospholipase activator activity, GTP binding; INVOLVED IN: response to cadmium ion, N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT1G70490.2); Has 15036 Blast hits to 15017 proteins in 510 species: Archae - 14; Bacteria - 52; Metazoa - 7716; Fungi - 1944; Plants - 2035; Viruses - 3; Other Eukaryotes - 3272 (source: NCBI BLink).
Protein Annotations
BioGrid:24195BioGrid:28605eggNOG:COG1100eggNOG:KOG0070
EMBL:AC009398EMBL:AC010796EMBL:AF360164EMBL:AY056341
EMBL:AY087235EMBL:CP002684EnsemblPlants:AT1G23490EnsemblPlants:AT1G23490.1
EnsemblPlants:AT1G70490.1EnsemblPlants:AT1G70490.2EnsemblPlants:AT1G70490.3entrez:838957
entrez:843385ExpressionAtlas:P0DH91Gene3D:3.40.50.300GeneID:838957
GeneID:843385Genevisible:P0DH91GO:GO:0005525GO:GO:0005773
GO:GO:0005794GO:GO:0005886GO:GO:0007264GO:GO:0015031
GO:GO:0016004GO:GO:0016192GO:GO:0043085Gramene:AT1G23490.1
Gramene:AT1G70490.1Gramene:AT1G70490.2Gramene:AT1G70490.3hmmpanther:PTHR11711
hmmpanther:PTHR11711:SF181InParanoid:P0DH91InterPro:IPR005225InterPro:IPR006689
InterPro:IPR024156InterPro:IPR027417KEGG:ath:AT1G23490KEGG:ath:AT1G70490
KO:K07937PaxDb:P0DH91Pfam:P0DH91Pfam:PF00025
Pfam:Q9LQC8Pfscan:PS51417PhylomeDB:P0DH91PIR:G96728
PRIDE:P0DH91PRINTS:PR00328PRO:PR:P0DH91PROSITE:PS51417
ProteinModelPortal:P0DH91Proteomes:UP000006548Reactome:R-ATH-1660514Reactome:R-ATH-199997
Reactome:R-ATH-421837RefSeq:NP_177206.1RefSeq:NP_564195.1RefSeq:NP_850975.1
RefSeq:NP_974120.1SMR:P0DH91STRING:3702.AT1G70490.1SUPFAM:SSF52540
TAIR:AT1G70490tair10-symbols:ARF1tair10-symbols:ATARFtair10-symbols:ATARF1
tair10-symbols:ATARFA1ATIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.18188
UniGene:At.19615UniProt:P0DH91UniProt:Q9LQC8
Coordinates (TAIR10) chr1:+:8337232..8338373
Molecular Weight (calculated) 20593.80 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.19
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLSFAKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIAGK A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)