suba logo
AT1G79090.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG2ReggNOG:ENOG410YXYMEMBL:AK229063EMBL:AK318693
EMBL:CP002684EnsemblPlants:AT1G79090EnsemblPlants:AT1G79090.1EnsemblPlants:AT1G79090.2
entrez:844250GeneID:844250GO:GO:0000290GO:GO:0000932
GO:GO:0003723GO:GO:0033962GO:GO:0045087Gramene:AT1G79090.1
Gramene:AT1G79090.2hmmpanther:PTHR21551hmmpanther:PTHR21551:SF4HOGENOM:HOG000238316
KEGG:ath:AT1G79090KO:K12617OMA:GIMNNAMPhylomeDB:Q0WPK4
Proteomes:UP000006548RefSeq:NP_565199.1RefSeq:NP_849904.1STRING:3702.AT1G79090.1
TAIR:AT1G79090UniGene:At.10596UniGene:At.68157UniProt:Q0WPK4
Coordinates (TAIR10) chr1:-:29749551..29752945
Molecular Weight (calculated) 88845.60 Da
IEP (calculated) 6.58
GRAVY (calculated) -0.53
Length 793 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAFGIGSSL NQAPVTQDLK KFGDNSTGNT MFDASQYAFF GNDVVEEVEL GGLEEEDEIL SFTGIAEDFS FDKEEVGDSR LLSDVDDLAS TFSKLNREPD
101: VYSNTGPITD RRSSQNSLAA EWTHGEELPN WYGRQILDSD AIKDDKVWSA QPFSSLDRVE QRIPDRTKLY PEPQRQLHQD HNQQQFSSEP ILVPKSSFVS
201: YPPPGSISPD QRLGHPNIPY QSGGPQMGSP NFSPFPNLQP QLPSMHHGSP QHTGNRPQFR PALPLNNLPP AQWMNRQNMH PGDSSGIMNN AMLQQPPHQN
301: GLMPPQMQGS QNRLPHPMQP PLGHMPGMQP QLFNSHLSRS SSSGNYDGML GFGDLREVRP GSGHGNRQNV RFPQQGFDAG VQRRYPFRSK YMSAGEIENI
401: LRMQLVATHS NDPYVDDYYH QACLAKKSAG AKLKHHFCPN HLRDLQQRAR SNNEPHAFLQ VEALGRVPFS SIRRPRPLLE VDPPNSAKFG NAEHKPTDKP
501: LDQEPMLAAR VYIEDGLCLL LEVDDIDRFL EFNQLQDGGH QLKQRRQALL QSLAVSLQLG DPLAKNGQSQ SLDDFLFLRV ISLPKGRKLL IRYLQLIFPG
601: SDLMRIVCMA IFRHLRSLFG VLSSDPDIIK TTNKLATVIN LCIQNMELGP VSTCLAAVSC SSEQAPLRPL GSPVGDGAST VLKSILDRAS ELIRANNFNN
701: AGIALWRASF NEFFNMLMRY CISKYDSIMQ SLQLPPHFAT EISEEAAKAI VREMPIELLR SSFPHIDEQQ KRILMEFLKR SMLGSQKTEP VLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)