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AT1G09020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : homolog of yeast sucrose nonfermenting 4
Curator
Summary (TAIR10)
putative activator subunit of SNF1-related protein kinase
Computational
Description (TAIR10)
homolog of yeast sucrose nonfermenting 4 (SNF4); CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase-related (TAIR:AT1G27070.1); Has 1379 Blast hits to 1368 proteins in 272 species: Archae - 14; Bacteria - 104; Metazoa - 613; Fungi - 295; Plants - 229; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
Protein Annotations
BioGrid:22664CAZy:CBM48eggNOG:COG0517eggNOG:KOG1616
eggNOG:KOG1764EMBL:AC000106EMBL:AF250335EMBL:AF439826
EMBL:BT000625EMBL:CP002684EMBL:DQ132632EMBL:DQ132633
EnsemblPlants:AT1G09020EnsemblPlants:AT1G09020.1entrez:837423GeneID:837423
Genevisible:Q944A6GO:GO:0004674GO:GO:0005634GO:GO:0005737
GO:GO:0005975GO:GO:0019887GO:GO:0030295GO:GO:0032147
GO:GO:0042149GO:GO:0045859GO:GO:0046777hmmpanther:PTHR13780
hmmpanther:PTHR13780:SF54HOGENOM:HOG000240774InParanoid:Q944A6IntAct:Q944A6
InterPro:IPR000644InterPro:IPR014756InterPro:IPR032640iPTMnet:Q944A6
KEGG:ath:AT1G09020OMA:RSNMDVDPaxDb:Q944A6Pfam:PF00571
Pfam:PF16561Pfam:Q944A6Pfscan:PS51371PhylomeDB:Q944A6
PIR:B86222PRIDE:Q944A6PRO:PR:Q944A6PROSITE:PS51371
ProteinModelPortal:Q944A6Proteomes:UP000006548Reactome:R-ATH-163680Reactome:R-ATH-200425
Reactome:R-ATH-380972RefSeq:NP_563834.1SMART:SM00116SMR:Q944A6
STRING:3702.AT1G09020.1SUPFAM:SSF54631SUPFAM:SSF81296TAIR:AT1G09020
tair10-symbols:ATSNF4tair10-symbols:SNF4UniGene:At.10386UniProt:Q944A6
Coordinates (TAIR10) chr1:-:2900149..2904212
Molecular Weight (calculated) 53469.30 Da
IEP (calculated) 6.67
GRAVY (calculated) -0.02
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MFGSTLDSSR GNSAASGQLL TPTRFVWPYG GRRVFLSGSF TRWTEHVPMS PLEGCPTVFQ VICNLTPGYH QYKFFVDGEW RHDEHQPFVS GNGGVVNTIF
101: ITGPDMVPAG FSPETLGRSN MDVDDVFLRT ADPSQEAVPR MSGVDLELSR HRISVLLSTR TAYELLPESG KVIALDVNLP VKQAFHILYE QGIPLAPLWD
201: FGKGQFVGVL GPLDFILILR ELGTHGSNLT EEELETHTIA AWKEGKAHIS RQYDGSGRPY PRPLVQVGPY DNLKDVALKI LQNKVAAVPV IYSSLQDGSY
301: PQLLHLASLS GILKCICRYF RHSSSSLPIL QQPICSIPLG TWVPRIGESS SKPLATLRPH ASLGSALALL VQAEVSSIPV VDDNDSLIDI YSRSDITALA
401: KDKAYAQIHL DDMTVHQALQ LGQDASPPYG IFNGQRCHMC LRSDSLVKVM ERLANPGVRR LVIVEAGSKR VEGIISLSDV FQFLLGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)