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AT2G40000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ortholog of sugar beet HS1 PRO-1 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ortholog of sugar beet HS1 PRO-1 2 (HSPRO2); CONTAINS InterPro DOMAIN/s: Hs1pro-1, C-terminal (InterPro:IPR009743), Hs1pro-1, N-terminal (InterPro:IPR009869); BEST Arabidopsis thaliana protein match is: Hs1pro-1 protein (TAIR:AT3G55840.1); Has 71 Blast hits to 71 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioGrid:3926eggNOG:ENOG410IFFHeggNOG:ENOG410YA6BEMBL:AF002109
EMBL:AY080778EMBL:AY087407EMBL:AY117156EMBL:BT002396
EMBL:CP002685EMBL:DQ132635EnsemblPlants:AT2G40000EnsemblPlants:AT2G40000.1
entrez:818588GeneID:818588Genevisible:O04203GO:GO:0005737
GO:GO:0006979GO:GO:0009751GO:GO:0009816Gramene:AT2G40000.1
hmmpanther:PTHR34795HOGENOM:HOG000238481InParanoid:O04203IntAct:O04203
InterPro:IPR009743InterPro:IPR009869iPTMnet:O04203KEGG:ath:AT2G40000
OMA:NIAGKPNPaxDb:O04203Pfam:O04203Pfam:PF07014
Pfam:PF07231PhylomeDB:O04203PIR:A84824PRIDE:O04203
PRO:PR:O04203ProteinModelPortal:O04203Proteomes:UP000006548RefSeq:NP_181529.1
STRING:3702.AT2G40000.1SUPFAM:SSF140959TAIR:AT2G40000tair10-symbols:ATHSPRO2
tair10-symbols:HSPRO2UniGene:At.27681UniProt:O04203
Coordinates (TAIR10) chr2:-:16700649..16701956
Molecular Weight (calculated) 49246.50 Da
IEP (calculated) 6.71
GRAVY (calculated) -0.25
Length 435 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDMDWKRKM VSSDLPNSPK LSSKLHVTIP SPFKIVPVSS PISCSAPALC SAYELYLRLP ELRKLWSSRD FPQWTSEPIL KPALQALEIS FRLVFAVCSD
101: TRPYINHREW NRRLDSLITK QIQLVAAICE DEEEEGISAE APVGGGRSSL SLLPQLATWR RSEALGKKIL YTIDNEMSRC KYTLGLGEQN IAGKPNLRYD
201: AICRPNEIYS LKDNPYADHI DNHENQTLYI IHQILESWIY ASGNLLNRIV SSIEEEKFGK ASNDVYLLEK IWKILAEIED LHMLMDPEDF LKLKKQLQIK
301: STGKNDAFCF RSKGLVEMMK MSKDLRQKVP AVLAVEVDPT GGPRLQEAAM KLYARKTECD KIHLLQGMQA VEAAAKSFFF GYRQLVAAMM GSAEMNATAS
401: QESCDSLSQI FMEPTYFPSL DAAKTFLGEF WSHLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)