suba logo
AT3G04640.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-rich protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycine-rich protein; Has 42937 Blast hits to 13549 proteins in 1124 species: Archae - 42; Bacteria - 16604; Metazoa - 12821; Fungi - 2296; Plants - 5249; Viruses - 609; Other Eukaryotes - 5316 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVI7eggNOG:ENOG41105VYEMBL:AC011437EMBL:BT025514
EMBL:CP002686EnsemblPlants:AT3G04640EnsemblPlants:AT3G04640.1EnsemblPlants:AT3G04640.2
entrez:819622ExpressionAtlas:Q9SR10GeneID:819622GO:GO:0031225
Gramene:AT3G04640.1Gramene:AT3G04640.2KEGG:ath:AT3G04640OMA:HFAHAIS
Proteomes:UP000006548RefSeq:NP_001078105.1RefSeq:NP_566234.1STRING:3702.AT3G04640.1
TAIR:AT3G04640UniGene:At.70150UniGene:At.72881UniProt:Q9SR10
Coordinates (TAIR10) chr3:-:1261062..1261541
Molecular Weight (calculated) 15888.90 Da
IEP (calculated) 10.56
GRAVY (calculated) -0.14
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLKKASLFL FLLLCLHLQL QHHFAHAVSR SSTSLAFVDP NHDDLPFQEV ELKPDGDVIE ANLPKLTVVV KKGGGGGGRG GGGFGGGGRS FGGGGSSSRG
101: GGGSSSRGGG GSSSRGGGLR PIPIYGGGTH RSGHHSSGGR ETASGWLGLS ILAGLGLVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)