suba logo
AT5G59550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger (C3HC4-type RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G46620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AY052711EMBL:AY063719
EMBL:CP002688EnsemblPlants:AT5G59550EnsemblPlants:AT5G59550.1entrez:836074
Gene3D:3.30.40.10GeneID:836074GO:GO:0000209GO:GO:0004842
GO:GO:0008270GO:GO:0009414GO:GO:0009737GO:GO:0010200
GO:GO:0042787GO:GO:0043161GO:GO:0051865GO:GO:0061630
Gramene:AT5G59550.1hmmpanther:PTHR22763hmmpanther:PTHR22763:SF42InterPro:IPR001841
InterPro:IPR010543InterPro:IPR013083KEGG:ath:AT5G59550OMA:DCHIGSE
Pfam:PF06547Pfam:PF13639Pfam:PF14369Pfscan:PS50089
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_568910.1SMART:SM00184
SMR:Q940T5STRING:3702.AT5G59550.1SUPFAM:SSF57850TAIR:AT5G59550
UniGene:At.9728UniProt:Q940T5
Coordinates (TAIR10) chr5:-:23998422..23999645
Molecular Weight (calculated) 44383.70 Da
IEP (calculated) 6.76
GRAVY (calculated) -0.54
Length 407 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSTPTTPTT TTPITASYWC YSCTRFVSVW ADQGTTTVGS VACPHCDGGF IEQINDSSSA ATELTIPAST EVRSINNNRR SVIRRRRSGR RPSFNPVIVL
101: QGGAGEREEG EEGDAARDRR AFEFYYDDGS GSGLRPLPDS VSEILMGSGF ERLLEQLSQI EASATGIGRS GNPPASKSAI ESLPRVEISD CHIGSEANCA
201: VCTEIFETET EAREMPCKHL FHDDCIVPWL SIRNSCPVCR FELPSEPNRR SNNNEEDNAV GMTIWRLPGG GFAVGRFNAA MRDGERVLPV VLTEMDGGGI
301: GNSQDGPRRI SWVRSHGTLE SDSNGTGSGS GSGGRLRRMV RGMVSLMRRV RPNRSSSSSS AAISTSSDNL DLNIEVESRV LDRSNSVMRR YFRRNRSNRD
401: SSSSVLH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)