AT5G59550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger (C3HC4-type RING finger) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G46620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:23998422..23999645 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44383.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.76 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 407 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPSTPTTPTT TTPITASYWC YSCTRFVSVW ADQGTTTVGS VACPHCDGGF IEQINDSSSA ATELTIPAST EVRSINNNRR SVIRRRRSGR RPSFNPVIVL 101: QGGAGEREEG EEGDAARDRR AFEFYYDDGS GSGLRPLPDS VSEILMGSGF ERLLEQLSQI EASATGIGRS GNPPASKSAI ESLPRVEISD CHIGSEANCA 201: VCTEIFETET EAREMPCKHL FHDDCIVPWL SIRNSCPVCR FELPSEPNRR SNNNEEDNAV GMTIWRLPGG GFAVGRFNAA MRDGERVLPV VLTEMDGGGI 301: GNSQDGPRRI SWVRSHGTLE SDSNGTGSGS GSGGRLRRMV RGMVSLMRRV RPNRSSSSSS AAISTSSDNL DLNIEVESRV LDRSNSVMRR YFRRNRSNRD 401: SSSSVLH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)