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AT3G15210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ethylene responsive element binding factor 4
Curator
Summary (TAIR10)
Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation.
Computational
Description (TAIR10)
ethylene responsive element binding factor 4 (ERF4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response factor 8 (TAIR:AT1G53170.1); Has 6170 Blast hits to 5786 proteins in 253 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6156; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:6086eggNOG:ENOG410J0HHeggNOG:ENOG410YQ8JEMBL:AB008106
EMBL:AF003098EMBL:AP000413EMBL:AY086232EMBL:AY140030
EMBL:BT010325EMBL:CP002686EnsemblPlants:AT3G15210EnsemblPlants:AT3G15210.1
entrez:820752Gene3D:3.30.730.10GeneID:820752Genevisible:O80340
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009723GO:GO:0009737GO:GO:0009864GO:GO:0009873
GO:GO:0010105GO:GO:0010200GO:GO:0016604GO:GO:0045892
Gramene:AT3G15210.1hmmpanther:PTHR31677HOGENOM:HOG000237624InParanoid:O80340
IntAct:O80340InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT3G15210
KO:K09286OMA:DCASPPTPaxDb:O80340Pfam:O80340
Pfam:PF00847Pfscan:PS51032PhylomeDB:O80340PIR:T52019
PRIDE:O80340PRINTS:PR00367PRO:PR:O80340PROSITE:PS51032
ProteinModelPortal:O80340Proteomes:UP000006548RefSeq:NP_188139.1SMART:SM00380
SMR:O80340STRING:3702.AT3G15210.1SUPFAM:SSF54171TAIR:AT3G15210
tair10-symbols:ATERF-4tair10-symbols:ATERF4tair10-symbols:ERF4tair10-symbols:RAP2.5
UniGene:At.47551UniProt:O80340
Coordinates (TAIR10) chr3:+:5121472..5122140
Molecular Weight (calculated) 23742.10 Da
IEP (calculated) 9.16
GRAVY (calculated) -0.48
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKMGLKPDP ATTNQTHNNA KEIRYRGVRK RPWGRYAAEI RDPGKKTRVW LGTFDTAEEA ARAYDTAARD FRGAKAKTNF PTFLELSDQK VPTGFARSPS
101: QSSTLDCASP PTLVVPSATA GNVPPQLELS LGGGGGGSCY QIPMSRPVYF LDLMGIGNVG RGQPPPVTSA FRSPVVHVAT KMACGAQSDS DSSSVVDFEG
201: GMEKRSQLLD LDLNLPPPSE QA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)