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AT1G17460.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRF-like 3
Curator
Summary (TAIR10)
Arabidopsis thaliana myb family transcription factor (At1g17460)
Computational
Description (TAIR10)
TRF-like 3 (TRFL3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 6 (TAIR:AT1G72650.2); Has 797 Blast hits to 787 proteins in 122 species: Archae - 0; Bacteria - 2; Metazoa - 159; Fungi - 55; Plants - 510; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IN1FeggNOG:ENOG410XXSPEMBL:AY080665EMBL:AY122966
EMBL:AY519537EMBL:CP002684EnsemblPlants:AT1G17460EnsemblPlants:AT1G17460.1
entrez:838319ExpressionAtlas:Q8RXU8Gene3D:1.10.10.60GeneID:838319
GO:GO:0003677Gramene:AT1G17460.1hmmpanther:PTHR21717hmmpanther:PTHR21717:SF25
HOGENOM:HOG000083346InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
Pfam:PF00249Pfscan:PS51294PhylomeDB:Q8RXU8PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_564025.2SMART:SM00717SMR:Q8RXU8
STRING:3702.AT1G17460.2SUPFAM:SSF46689TAIR:AT1G17460tair10-symbols:TRFL3
UniGene:At.41833UniProt:Q8RXU8
Coordinates (TAIR10) chr1:+:5999519..6002546
Molecular Weight (calculated) 66957.70 Da
IEP (calculated) 5.62
GRAVY (calculated) -0.63
Length 604 amino acids
Sequence (TAIR10)
(BLAST)
001: MFGNVKDYGE TFQDSIFQTR NGSLSSTNQI GNPVTYKLVR VAGDGSLVPA TDEEMLEVKN LLEKNEQDMP VLPDPIQTEE YIPDEGSPSQ FLQLENFEGF
101: FQSETAGPYT ENLNSRHESK EELMNGSQML FVLPDTKFQI STELSGNVEL VPSKVLLQEP ILFSSNGCSI NQSTDVLNAT ASPKEPALST AASKPDFSRV
201: PGEISLANLS IKELQETFRA TFGRETTSKD KRWLKRRIKM GLINSCVVPT TTLTINDSKL IGGDQDAIDA FSKGTVDEET ATESIDTPAS PDGIKGHSND
301: FGHSPVETFV DHYSGNEDFE GEDGSAKRVR KPTRRYIEET NEKQQIDGSM IPSKDPSSIQ AVSSEGRVVV TRMVSLAGSR IQVPYVSHVR RSRPRENIMA
401: LGEFRSKSWE VKAAPEEGNL NLSPPQLSND VNRVPGVKSA SRCVQKESDK DHLKPIFTDV DQEMMEPELL DSSGDSSDDN FVDAPITQSA SGRKLHRAWT
501: ISEVEKLVEG VSKYGVGKWT EIKKLSFSPY THRTTVDLKD KWRNLQKASS SNRMEGGLKK HGSMAIPTHI MLQVRELAQK QSPISRVVSK ARVVKRSRSR
601: NGFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)