AT5G48720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : x-ray induced transcript 1 | ||||||||
| Curator Summary (TAIR10) |
Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation. | ||||||||
| Computational Description (TAIR10) |
X-RAY INDUCED TRANSCRIPT 1 (XRI1); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1); Has 117 Blast hits to 117 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19760038..19761621 | ||||||||
| Molecular Weight (calculated) | 29691.80 Da | ||||||||
| IEP (calculated) | 4.80 | ||||||||
| GRAVY (calculated) | -0.60 | ||||||||
| Length | 266 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MTEVTLNQED HSYMFDDENT PVKACSELGY HVTTEDTNRK MEVHSETRSA LKRRRMLQFE DQPETSLFSS ESFSAILKSS ARDDTFDELL PEGSQLIEGF 101: SEDASASSFE GLDLYAEEWY ADCLNDAETP MLPDDLNFGS PDVQVDISEY LNVPPETETR EVQRPVTRSS PNVIFKGRKS FSRPVSKLPS SIIYPFAFIK 201: PCGVHGGMTL KDINQKIRNP PAKPKAHIEE PAVIQTSAFS GKPVVGKTKI RTEGGKGSIT IMRTRG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)