AT5G03780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRF-like 10 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TRF-like 10 (TRFL10); FUNCTIONS IN: DNA binding; INVOLVED IN: response to salicylic acid stimulus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (TAIR:AT1G01150.1); Has 259 Blast hits to 250 proteins in 74 species: Archae - 0; Bacteria - 8; Metazoa - 88; Fungi - 19; Plants - 87; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:999266..1000947 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47043.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.51 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||
| Length | 420 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIEKKLSKMK MRTKSIPVRS SRKSLDSLLD DEANENTQCD ERDVPHKKRR CLGTSETTDR GGSVEPLLDL DACIVCEVSD ERVSRCCGVD CLLSFHGECL 101: YADLGSTSSS SSSSSEDVSN PFCPYCWLKI VALKSKTLRE KTVEAEKAVC KYLDKEMKSR DEDITLSGDE IGNQEQSTDI VSDHELQGEK DGCSSKPDAD 201: QGKVGTGKVI DEVGASEKVA TEKFQDAEDD ETAKDQGTRI LNTGAGKKRE VSSFLSMQES FSAKEQDQVQ QNEKRRRRGL KIIDSDISSK GSSNERNGED 301: VTEQVTSSVQ VTSPSGRMRN QQATTKVVAK SKTVRDISFF KMDQRRRLLW TYEEEEMLKV GVEKFAAEAN KNMPWRKILE MGEKVFHETR TPADLKDKWR 401: SMVKIMNKNE QGSTLTPTAM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)