AT5G60250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger (C3HC4-type RING finger) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24252226..24254710 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73471.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.82 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 655 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDFDSEYAFR LQMEEALAAS LSSQSRTPQR PPSPPIVATC GVLIVENNPN DSKTAKTSSG YGFDFKRAVG GGNSKAKGKT HESVTGVRTD ERNPNIGLGN 101: SRSTSTGHGN TKPLPQETVR PAQLVGEGSS RVNTAAGKIN GNLLYRLYFK GLVSDENGKG KMTDVVSGFG VAICDQRDNL LFEMKGPLID NGMSRQGAEL 201: KALIRGLTEA LKLGIKHIVF FCDSYPIFQY VTGKWMAKQK KISLLLDDLQ SIMQHFSSYQ HVLVARNDVK FAYKLARESI LSMVTPHEDP RQAKAVLKEE 301: CAICFNDIVA EGMFSVDKCR HRFCFQCVKQ HVEVKLLHGM APKCPHDGCK SELVIDACGK LLTPKLSKLW QQRLQENAIP VTERVYCPYP RCSALMSKTK 401: ISESAKSLLS LYPKSGVRRC VECRGLFCVD CKVPWHGNLS CTEYKKLHPE PPADDVKLKS LANNKMWRQC GKCQHMIELS QGCNHITCRC GHEFCYNCGG 501: GWNKIMGTCL NRCPTWNEEY ITRQDPARAN VAANNYFDDE DDDDVDGDYD YDDFFHPHFG HAMNDRNPEE PFDPFFDLPD GVLFTPQMLS SKSRQQLYLP 601: DSDDSDDNAT TQNAPAADEN CPYFGKYGKY TIMYDSDGYE LEDFTNPFHP DYPHF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)