AT5G24280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : gamma-irradiation and mitomycin c induced 1 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 (GMI1); BEST Arabidopsis thaliana protein match is: defective in meristem silencing 3 (TAIR:AT3G49250.1); Has 114 Blast hits to 102 proteins in 24 species: Archae - 0; Bacteria - 7; Metazoa - 8; Fungi - 4; Plants - 91; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8251378..8261401 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 179134.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.75 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||
| Length | 1598 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSSRRSVKRS LVLDDDDDED IFYNFKVLLP NGTSVKLTLK NPEPEISMQS FVNLVKKEYD NARKDCLLMS KRMKVDWNSG GKFHLESNGG KMKGIVRFAA 0101: FKPDLCHIIR LDDGSGIAST MYENLWDLTP DTDLLKELPE NYSFETALAD LIDNSLQAVW PYREGARKLI SVDISGDHIT VFDTGRGMDS SEGNSIDKWG 0201: KIGASLHRSQ KTGAIGGNPP YLKPYFGMFG YGGPYASMFL GRCDFSFCLP ILICIVLLRL TLFSVRRTLV SSKTKESKKV FTLQFKKEAL IDNRSIVGKN 0301: WKTDGGMRDP SEEEMKLSPH GSFTKVEIFE SEFDISKIYQ LQCRLKDIYF PYIQFCLATI FLCDELSKTG RTERPVAFQV NGEDLAEIAG GEVAITNLHS 0401: KGQFFSFQIR FTLFGGKRKG TAQEANARLK FVYFPIVQGK ESIEKILQSL EEEGCKVSES FQTFGRVSLR RLGRLLPEVR WDSIPFMQRG NRASTLQKSC 0501: RRVKCFVDLD AGFSPTPSKT DLASQNPFSV ALRNFGSKST EKEKDDDVNI VIHREGKSVS YAHLEEKYQE WVLEMHNTHD EEAASGLDEA VLIVGSLDKK 0601: ALGILRDAVR VHKEVRRKEK TWKRGQNIKI LRGAYAGIHN NNVYATIDYF LIEGFEDEAG GDTRILCRPI DRPENEGCKL SIIDGISKLE VQSSLSLPIT 0701: IIDSGKCLPV DANEWNRKLD KQQEKAPSKI DLLDERDCRE LKIDGELPIG NSVRAGKAPP KQIVAVVRPA CFTSLTPSKK LDQKNIVKMD GEEMVMVVKL 0801: KSSDKNISSQ RLFPTSRKGI SGLYIFSLGS KFPNLFKKAG TYNFSFSIGN SIKCNKTVVV RPSSKAARWE LDDNLESLPC NVRVGSSLPP FRIACFDKYK 0901: NKIPFTSVPS LEVELEASPG FLIKIDKLET NLINDGLILK IENMLVETDE LDQIRPNYEA TLEIRAMDNP FSVSVPCKVN PGPLKRVAVN NPKALENLLP 1001: DSTVEDFILE LFDGYNNHVA EGTDVLIHID GYRIEDWMGI NRKVDSRGCI NLSGILKVTE GYGKSVSLSV MSGNEVIFCK ESQIDERQLR LVTELPDCCT 1101: AGTNLMNLIF QVTELDGSLD TSIHHDEKSG CFHTMSIESD SSSVESAIRY AFVHGSCKVS SLSLPENEGV FSCRVFHSRY PELQMSIKIQ VTSAPTSERE 1201: ESGYSTPHSK TTPPPESGIP SITNPWPTPC SQFGVLAIRS SSLALSSETS LMDMAQYTED LKEKINIDEE RRVELEERLK CLQAQREHAE QECSRLQASL 1301: EPLGAPFPEC LSTKESMMKQ IEEKHHDTAA SVFCCLYRKA PPPRSLFLSQ KGMFGVVALL GSVASTSLSR VLSEYLGKDT MLSLVCKSSQ FGPKSDEYRK 1401: FQSEAASLGR SITNRFLVIC LDATRPWRNG LVRNDPQKRL AMDNPYLPNG DPIPGFKGYA VNMIDLASEE LDIQSSSGYG LRETLFYGVF RELQVYETAE 1501: HLEAALPHIN GGDAVSLDGV IARENGFIYS GCCTPEVHFP ITVTERQEKA LVQLEITRDK KRKTEEMMTE ENRSLRRLVK KLKKANEKYQ NFTAMADS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)