AT4G38780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pre-mRNA-processing-splicing factor | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pre-mRNA-processing-splicing factor; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: spliceosomal complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding (InterPro:IPR019581), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding (InterPro:IPR019580), PROCN (InterPro:IPR012592), PRP8 domain IV core (InterPro:IPR021983), PRO, C-terminal (InterPro:IPR012984), RNA recognition motif, spliceosomal PrP8 (InterPro:IPR019582); BEST Arabidopsis thaliana protein match is: Pre-mRNA-processing-splicing factor (TAIR:AT1G80070.1); Has 803 Blast hits to 702 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 318; Fungi - 227; Plants - 60; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18101438..18111029 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 271530.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.08 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 2332 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MWNIDGTSLA PPGTDGSRMQ TPSHPADHPS YTAPSNRNTP TVPTPEDAEA KLEKKARTWM QLNSKRDHGD MSSKKHRLDK RVYLGALKFV PHAVFKLLEN 0101: MPMPWEQVRD VKVLYHITGA ITFVNEVRWV VEPIYMAQWG SMWIMMRREK RDRRHFKRMR FPPFDDEEPP LDYADNLLDV DPLEAIQLEL DEEEDSAVYS 0201: WFYDHKPLVK TKMINGPSYQ TWNLSLPIMS TLHRLAAQLL SDLVDRNYFY LFDMPSFFTA KALNMCIPGG PKFEPLHRDM EKGDEDWNEF NDINKLIIRS 0301: PLRTEYKVAF PHLYNNRPRK VKLCVYHTPM VMYIKTEDPD LPAFYYDPLI HPISNSNNTN KEQRKSNGYD DDGDDFVLPE GLEPLLNNSP LYTDTTAPGI 0401: SLLFAPRPFN MRSGRTRRAE DIPLVAEWFK EHCPPAYPVK VRVSYQKLLK CYLLNELHHR PPKAQKKKHL FRSLAATKFF QSTELDWVEV GLQVCRQGYN 0501: MLNLLIHRKN LNYLHLDYNF NLKPVKTLTT KERKKSRFGN AFHLCREILR LTKLVVDANV QFRLGNVDAF QLADGLQYIF SHVGQLTGMY RYKYRLMRQI 0601: RMCKDLKHLI YYRFNTGPVG KGPGCGFWAP MWRVWLFFLR GIVPLLERWL GNLLARQFEG RHSKGVAKTV TKQRVESHFD LELRAAVMHD VVDAMPEGIK 0701: QNKARTILQH LSEAWRCWKA NIPWKVPGLP VAIENMILRY VKSKADWWTN VAHYNRERIR RGATVDKTVC RKNLGRLTRL WLKAEQERQH NFQKDGPYVT 0801: ADEGIAIYST TVNWLESRKF SAIPFPPLSY KHDTKLLILA LERLKESYSA AVKLNQQQRE ELGLIEQAYD NPHEALMRIK RHLLTQHSFK EVGIEFMDLY 0901: SHLIPVYQID PLEKITDAYL DQYLWYEGDK RHLFPNWIKP ADSEPPPLLV YKWCQGINNL QGIWDTSDGQ CVVMLQTKFE KLFEKIDLTV LNSLLRLVLD 1001: PKLANYVTGK NNVVLSYKDM SYTNTYGLIR GLQFASFVVQ FYGLVLDLLL LGLTRASEIA GPPQRPNEFM TYWDTKVETR HPIRLYSRYI DKVHIMFKFT 1101: HEEARDLIQR HLTERPDPNN ENMVGYNNKK CWPRDARMRL MKHDVNLGRS VFWDMKNRLP RSITTLEWEN GFVSVYSKDN PNLLFSMCGF EVRVLPKIRM 1201: GQEAFSSTRD GVWNLQNEQT KERTAVAFLR ADDEHMKVFE NRVRQILMSS GSTTFTKIVN KWNTALIGLM TYFREATVHT QELLDLLVKC ENKIQTRVKI 1301: GLNSKMPSRF PPVIFYTPKE IGGLGMLSMG HILIPQSDLR YSNQTDVGVS HFRSGMSHEE DQLIPNLYRY IQPWESEFID SQRVWAEYAL KRQEAQAQNR 1401: RLTLEDLEDS WDRGIPRINT LFQKDRHTLA YDKGWRVRTD FKQYQALKQN PFWWTHQRHD GKLWNLNNYR TDVIQALGGV EGILEHTLFK GTYFPTWEGL 1501: FWEKASGFEE SMKYKKLTNA QRSGLNQIPN RRFTLWWSPT INRANVYVGF QVQLDLTGIY MHGKIPTLKI SLIQIFRAHL WQKIHESVVM DLCQVLDQEL 1601: EPLEIETVQK ETIHPRKSYK MNSSCADVLL FAAHKWPMSK PSLIAESKDV FDQKASNKYW IDVQLRWGDY DSHDIERYTK AKFMDYTTDN MSIYPSPTGV 1701: IIGLDLAYNL HSAFGNWFPG SKPLLAQAMN KIMKSNPALY VLRERIRKGL QLYSSEPTEP YLSSQNYGEI FSNQIIWFVD DTNVYRVTIH KTFEGNLTTK 1801: PINGVIFIFN PRTGQLFLKI IHTSVWAGQK RLGQLAKWKT AEEVAALVRS LPVEEQPKQV IVTRKGMLDP LEVHLLDFPN IVIKGSELQL PFQACLKIEK 1901: FGDLILKATE PQMALFNIYD DWLMTVSSYT AFQRLILILR ALHVNNEKAK MLLKPDMSVV TEPNHIWPSL TDDQWMKVEV ALRDLILSDY AKKNKVNTSA 2001: LTQSEIRDII LGAEITPPSQ QRQQIAEIEK QAKEASQLTA VTTRTTNVHG DELISTTISP YEQSAFGSKT DWRVRAISAT NLYLRVNHIY VNSDDIKETG 2101: YTYIMPKNIL KKFICIADLR TQIAGYLYGI SPPDNPQVKE IRCVVMVPQC GNHQQVQLPS SLPEHQFLDD LEPLGWIHTQ PNELPQLSPQ DVTFHTRVLE 2201: NNKQWDAEKC IILTCSFTPG SCSLTSYKLT QAGYEWGRLN KDTGSNPHGY LPTHYEKVQM LLSDRFFGFY MVPENGPWNY NFMGANHTVS INYSLTLGTP 2301: KEYYHQVHRP THFLQFSKME EDGDLDRDDS FA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)