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AT4G38380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G38330.1); Has 13476 Blast hits to 13444 proteins in 2154 species: Archae - 331; Bacteria - 10835; Metazoa - 81; Fungi - 150; Plants - 389; Viruses - 0; Other Eukaryotes - 1690 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AL035539EMBL:AL161593
EMBL:CP002687EnsemblPlants:AT4G38380EnsemblPlants:AT4G38380.1entrez:829995
GeneID:829995Genevisible:Q9SVE7GO:GO:0009507GO:GO:0015238
GO:GO:0015297GO:GO:0016021GO:GO:0031969Gramene:AT4G38380.1
hmmpanther:PTHR11206hmmpanther:PTHR11206:SF149InParanoid:Q9SVE7InterPro:IPR002528
KEGG:ath:AT4G38380OMA:DFPYAACPaxDb:Q9SVE7Pfam:PF01554
Pfam:Q9SVE7PIR:T05666PRIDE:Q9SVE7PRO:PR:Q9SVE7
ProteinModelPortal:Q9SVE7Proteomes:UP000006548RefSeq:NP_195551.5STRING:3702.AT4G38380.1
TAIR:AT4G38380TIGRfam:TIGR00797TIGRFAMs:TIGR00797TMHMM:TMhelix
UniGene:At.65831UniProt:Q9SVE7
Coordinates (TAIR10) chr4:-:17971855..17974787
Molecular Weight (calculated) 59820.30 Da
IEP (calculated) 10.14
GRAVY (calculated) 0.54
Length 560 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSRVVVGG GLPLANRRNS SFAKPKIQQG TFLPLSRINN VSAPQKCSLH TNPNPMFPFV TRRKSQTNPD CGVVKLGEED DSCSSLDKLP EVNGVHTGVA
101: RPVDIKRELV MLSLPAIAGQ AIDPLTLLME TAYIGRLGSV ELGSAGVSMA IFNTISKLFN IPLLSVATSF VAEDIAKIAA QDLASEDSQS DIPSQGLPER
201: KQLSSVSTAL VLAIGIGIFE ALALSLASGP FLRLMGIQSM SEMFIPARQF LVLRALGAPA YVVSLALQGI FRGFKDTKTP VYCLGIGNFL AVFLFPLFIY
301: KFRMGVAGAA ISSVISQYTV AILMLILLNK RVILLPPKIG SLKFGDYLKS GGFVLGRTLS VLVTMTVATS MAARQGVFAM AAHQICMQVW LAVSLLTDAL
401: ASSGQALIAS SASKRDFEGV KEVTTFVLKI GVVTGIALAI VLGMSFSSIA GLFSKDPEVL RIVRKGVLFV AATQPITALA FIFDGLHYGM SDFPYAACSM
501: MVVGGISSAF MLYAPAGLGL SGVWVGLSMF MGLRMVAGFS RLMWRKGPWW FMHTSDKRLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)