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AT4G14790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP-dependent RNA helicase, mitochondrial (SUV3)
Curator
Summary (TAIR10)
encodes a nuclear-encoded DExH box RNA helicase, which is localized to mitochondria and whose in vitro ATPase activity is stimulated with mitochondrial RNA.
Computational
Description (TAIR10)
ATSUV3; CONTAINS InterPro DOMAIN/s: Mitochondrial degradasome RNA helicase subunit C-terminal (InterPro:IPR022192), DNA/RNA helicase, C-terminal (InterPro:IPR001650); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, mitochondrial, putative (TAIR:AT5G39840.1); Has 3666 Blast hits to 3643 proteins in 672 species: Archae - 20; Bacteria - 977; Metazoa - 276; Fungi - 353; Plants - 117; Viruses - 18; Other Eukaryotes - 1905 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2515-MONOMEREC:3.6.4.13eggNOG:ENOG410XSEYeggNOG:KOG0953
EMBL:AJ132843EMBL:AK229714EMBL:AL161540EMBL:AY139995
EMBL:BT008910EMBL:CP002687EMBL:Z97337EnsemblPlants:AT4G14790
EnsemblPlants:AT4G14790.1entrez:827134Gene3D:3.40.50.300GeneID:827134
Genevisible:Q9SMX1GO:GO:0003723GO:GO:0004004GO:GO:0005524
GO:GO:0005634GO:GO:0005739GO:GO:0009555GO:GO:0009561
GO:GO:0016070GO:GO:0042645Gramene:AT4G14790.1hmmpanther:PTHR12131
hmmpanther:PTHR12131:SF2HOGENOM:HOG000175283InParanoid:Q9SMX1InterPro:IPR001650
InterPro:IPR022192InterPro:IPR027417KEGG:ath:AT4G14790KO:K17675
OMA:GEVTCLNPaxDb:Q9SMX1Pfam:PF00271Pfam:PF12513
Pfam:Q9SMX1Pfscan:PS51194PhylomeDB:Q9SMX1PIR:H71410
PIR:T52576PRIDE:Q9SMX1PRO:PR:Q9SMX1PROSITE:PS51192
PROSITE:PS51194ProteinModelPortal:Q9SMX1Proteomes:UP000006548RefSeq:NP_193215.2
SMART:SM00490SMR:Q9SMX1STRING:3702.AT4G14790.1SUPFAM:SSF52540
TAIR:AT4G14790tair10-symbols:ATSUV3tair10-symbols:EDA15UniGene:At.509
UniProt:Q9SMX1
Coordinates (TAIR10) chr4:-:8496351..8499829
Molecular Weight (calculated) 63645.70 Da
IEP (calculated) 8.10
GRAVY (calculated) -0.16
Length 571 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYSVVRLRK VSALGISRVL QADKGSLWRF HFEPEFGDLL RLGVLTRNYR KNSGSPKFDF TGTGTTSKFD FTDLTCPHTW YPIARKKKRK VILHVGPTNS
101: GKTYSALKHL EQSSSGVYCG PLRLLAWEVA KRLNKANVPC DLITGQEKDL VEGATHKAVT VEMADVTSVY DCAIIDEIQM VGCKQRGFAF TRALLGIAAD
201: ELHLCGDPAV VPLVEDILKV TGDDVEVHTY ERLSPLVPLK VPVSSVSSIK TGDCLVTFSR KDIYAYKKTI ERAGKHLCSV VYGSLPPETR TAQATRFNDE
301: TNDFDVLVAS DAIGMGLNLN ISRIIFSTLQ KYDGSETRDL TVSEIKQIAG RAGRFQSKFP IGEVTCLHKE DLPLLHSSLK SPSPILERAG LFPTFDLLSG
401: YSQAHPTHGL YQILEHFVEN AKLSSNYFIS NVEDMMKVAA IVDELPLGLQ EKYLFVVSPV DVNDEISGQG LAQFAQNFSK AGIVRLREIL APDRVKVPKT
501: PTELKELESI HKVLDLYVWL SLRLEDSFPD REVAASQKSI CNLLIEQFLE GNRLNSPARF SRYLRRQKLS E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)