AT2G17580.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Polynucleotide adenylyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT1G28090.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:7646507..7650066 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85428.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.68 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||
| Length | 757 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGFIKRKGN VFFHSQALAA VYSKLQRSNC TLAEGFMEKC SSIRQVIDED INSVDTSKWK KVRASDAGIK NSMIPESSMN VLRLLRRQGF DAYLVGGCVR 101: DLILNRVPKD YDVITTADLK QIRRLFHRAQ VIGKRFPICH VWMGGSIIEV SSFDTVAHSD SDLEKSKEKS GVSLDTKANK NNSLFKMYSG WDIKDCKRWR 201: NSLQRDFTIN SLFYNPFDFT IYDYANGMED LTDLKLRTLV PAHLSFKEDC ARILRGLRIA ARLGLSLSKD VKTAIPEFVS SVANLDQFRL IMEMNYMLAY 301: GAAAPSILLL MKFKLLHVLL PFQAAYLDQA SKTSLSSSLM LVRLFSNMDK LVSCDQPADP KLWIAVLAFH IALVRNPQEA IVVRAFAALL YHGNWSKAVE 401: FAREHETSVI GYAPEVSKSS RKRSDEDLAE AVSEFTCLLK DTQYVLTDKE ALREALYLYP DFKFSGLVFI PKKKGRDVAE GFMRLSDVES YESQKEGFSI 501: DYVLLGKGNP CEVRFVLGKI ILDTITEGTV IEPLNSVKKK QSTRNHIVPA ACLEKKDELF VSKSSKEDNN NQTPVHDSNA SSVLKILKRT REDSEQNNDQ 601: ETEVCPRTPS GPAKNQDQSV VQMLKRRRSK EAPVSEPPKQ KTSKRSRSDD QEAVGSLSVP AKIQHQSNKH DTNAPICELP KQKTSKNHSK ESRKVKHNDL 701: PVKEIKEAKQ GFVSDKSMSD LLQVLEKSSQ QVSSKEENNS LSSEKTNRPR KLSSLFR |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)