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AT1G08410.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G27200.1); Has 7267 Blast hits to 7158 proteins in 1932 species: Archae - 109; Bacteria - 4700; Metazoa - 622; Fungi - 502; Plants - 285; Viruses - 0; Other Eukaryotes - 1049 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1161eggNOG:KOG1424EMBL:AC006932EMBL:BT023444
EMBL:BT030367EMBL:CP002684EnsemblPlants:AT1G08410EnsemblPlants:AT1G08410.1
entrez:837361Gene3D:3.40.50.300GeneID:837361Genevisible:Q9SJF1
GO:GO:0003924GO:GO:0005525GO:GO:0005634GO:GO:0005730
GO:GO:0005829GO:GO:0006364GO:GO:0042254GO:GO:0043022
GO:GO:0048366GO:GO:0048825GO:GO:0090070GO:GO:2000012
hmmpanther:PTHR11089hmmpanther:PTHR11089:SF7HOGENOM:HOG000172552InterPro:IPR006073
InterPro:IPR027417InterPro:IPR030378KEGG:ath:AT1G08410KO:K14539
OMA:YTINHSSPaxDb:Q9SJF1Pfam:PF01926Pfam:Q9SJF1
Pfscan:PS51721PhylomeDB:Q9SJF1PRIDE:Q9SJF1PRINTS:PR00326
PRO:PR:Q9SJF1PROSITE:PS51721ProteinModelPortal:Q9SJF1Proteomes:UP000006548
RefSeq:NP_172317.1SMR:Q9SJF1STRING:3702.AT1G08410.1SUPFAM:SSF52540
TAIR:AT1G08410UniGene:At.24863UniProt:Q9SJF1
Coordinates (TAIR10) chr1:+:2646307..2649106
Molecular Weight (calculated) 66746.10 Da
IEP (calculated) 5.60
GRAVY (calculated) -0.61
Length 589 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKSEKTSLG RSLVKHHNHM IQESKDKGKY YKNLQKKVLE SVTEVSDIDA IIEQAEEAER LYTINHSSST PLSINLDTNS SSSVIAAEEW REQQKIEEAL
101: HASSLQVPRR PPWTPEMSVE ELDANEKQAF LNWRRMLVSL EENEKLVLTP FEKNLDIWRQ LWRVLERSDL IVMVVDARDP LFYRCPDLEA YAQEIDEHKK
201: IMLLVNKADL LPTDVREKWA EYFRLNNILF VFWSAIAATA TLEGKVLKEQ WRQPDNLQKT DDPDIMIYGR DELLSRLQFE AQEIVKVRNS RAASVSSQSW
301: TGEYQRDQAV VGFVGYPNVG KSSTINALVG QKRTGVTSTP GKTKHFQTLI ISDELMLCDC PGLVFPSFSS SRYEMIASGV LPIDRMTEHR EAIQVVADKV
401: PRRVIESVYN ISLPKPKTYE RQSRPPHAAE LLKSYCASRG YVASSGLPDE TKAARLILKD YIGGKLPHYA MPPGMPQADE PDIEDTQELE DILEGSESDD
501: SAVGDETENE QVPGIDDVLD DLSSFDLANG LKSSKKVTAK KQTASHKQHK KPQRKKDRTW RVQNTEDGDG MPSVKVFQKP ANTGPLTMR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)