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AT1G77030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DBP10CT (InterPro:IPR012541), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 42888 Blast hits to 42073 proteins in 3063 species: Archae - 831; Bacteria - 21864; Metazoa - 5973; Fungi - 4375; Plants - 2654; Viruses - 31; Other Eukaryotes - 7160 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G77030-MONOMEREC:3.6.4.13eggNOG:ENOG410XQE5eggNOG:KOG0337
EMBL:AC002291EMBL:CP002684EnsemblPlants:AT1G77030EnsemblPlants:AT1G77030.1
entrez:844039Gene3D:3.40.50.300GeneID:844039Genevisible:O49289
GO:GO:0003723GO:GO:0004386GO:GO:0005524GO:GO:0005634
Gramene:AT1G77030.1hmmpanther:PTHR24031hmmpanther:PTHR24031:SF292HOGENOM:HOG000246455
InParanoid:O49289InterPro:IPR001650InterPro:IPR011545InterPro:IPR012541
InterPro:IPR014001InterPro:IPR014014InterPro:IPR027417KEGG:ath:AT1G77030
KO:K14808OMA:KLKQHVPPaxDb:O49289Pfam:O49289
Pfam:PF00270Pfam:PF00271Pfam:PF08147Pfscan:PS51192
Pfscan:PS51194Pfscan:PS51195PhylomeDB:O49289PIR:D96799
PRIDE:O49289PRO:PR:O49289ProDom:PD024971PROSITE:PS51192
PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:O49289Proteomes:UP000006548
RefSeq:NP_177829.5SMART:SM00487SMART:SM00490SMART:SM01123
SMR:O49289STRING:3702.AT1G77030.1SUPFAM:SSF52540TAIR:AT1G77030
UniGene:At.52542UniProt:O49289
Coordinates (TAIR10) chr1:-:28947887..28951526
Molecular Weight (calculated) 93509.00 Da
IEP (calculated) 10.59
GRAVY (calculated) -0.64
Length 845 amino acids
Sequence (TAIR10)
(BLAST)
001: MVEGKGFLVS SVTELHRKEK QKKKGKSGGF ESLNLGPNVF NAIKKKGYKV PTPIQRKTMP LILSGVDVVA MARTGSGKTA AFLIPMLEKL KQHVPQGGVR
101: ALILSPTRDL AEQTLKFTKE LGKFTDLRVS LLVGGDSMED QFEELTKGPD VIIATPGRLM HLLSEVDDMT LRTVEYVVFD EADSLFGMGF AEQLHQILTQ
201: LSENRQTLLF SATLPSALAE FAKAGLREPQ LVRLDVENKI SPDLKLSFLT VRPEEKYSAL LYLVREHISS DQQTLIFVST KHHVEFVNSL FKLENIEPSV
301: CYGDMDQDAR KIHVSRFRAR KTMLLIVTDI AARGIDIPLL DNVINWDFPP RPKIFVHRVG RAARAGRTGC AYSFVTPEDM PYMLDLHLFL SKPVRPAPTE
401: DEVLKNMEEV MTKTSQAIDS GVTVYGRFPQ KTIDLIFNRT REMIDSSAEL DSLERTSTKA FRLYSKTKPS PSKESIRRAK DLPREGLHPI FRSIIETGEL
501: EAMSFFQKIK NFRPKQTILE AEGEVAKSKH VKGPAGQWVD VMKKKRAIHE EIINTRHQQN QKTSNNHLEM EAEPTTSFVD GTVEGSKVSG KKRKAQETFK
601: DDEFFISSIP VNHHSEAGLS LRGNEGFGSN RLDAAVLDLV ADDGQGIKQQ QSNYHWDKKG KKYIKLNNGD RVTASGKIKT ESGAKATAKK TGIYKRWQER
701: SHKKVSRDSG DADETTRMSG RGGRDGKRRQ GSVPNAHVRS EIKDLDQVRK ERQQKANKVS YLQSKRGGRG GRGGARGGRG GGARGGRGGS RDFGGGGRDF
801: GSSSDRGGRS GGRDFGGRRG GASTSSRGGK RGGGRGGGGK RGRGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)