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AT3G59630.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.748
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : diphthamide synthesis DPH2 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
diphthamide synthesis DPH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Diphthamide synthesis, DPH1/DHP2 (InterPro:IPR002728), Diphthamide synthesis, DHP2 (InterPro:IPR010014); BEST Arabidopsis thaliana protein match is: diphthamide synthesis DPH2 family protein (TAIR:AT5G62030.1); Has 995 Blast hits to 948 proteins in 287 species: Archae - 127; Bacteria - 0; Metazoa - 243; Fungi - 308; Plants - 94; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1736eggNOG:KOG2648EMBL:AL138659EMBL:AY075613
EMBL:BT015772EMBL:CP002686EnsemblPlants:AT3G59630EnsemblPlants:AT3G59630.1
entrez:825132GeneID:825132GO:GO:0017183Gramene:AT3G59630.1
hmmpanther:PTHR10762hmmpanther:PTHR10762:SF2HOGENOM:HOG000182223InterPro:IPR010014
InterPro:IPR016435KEGG:ath:AT3G59630KO:K17866OMA:EIECFVL
PANTHER:PTHR10762PANTHER:PTHR10762:SF2Pfam:PF01866PhylomeDB:Q9M1A5
PIR:T49304Proteomes:UP000006548RefSeq:NP_191522.1STRING:3702.AT3G59630.1
TAIR:AT3G59630TIGRfam:TIGR00272TIGRfam:TIGR00322TIGRFAMs:TIGR00272
TIGRFAMs:TIGR00322UniGene:At.43258UniPathway:UPA00559UniProt:Q9M1A5
Coordinates (TAIR10) chr3:-:22025355..22027776
Molecular Weight (calculated) 54845.90 Da
IEP (calculated) 5.36
GRAVY (calculated) -0.25
Length 491 amino acids
Sequence (TAIR10)
(BLAST)
001: MELEFESKYE INRTAEFIIS KSFTRIALQF PDELLKDSTK VVSALKSKTR LLTDREVRFF VMADTTYGSC CIDEVGALHI DSECVVHYGQ TCLSPTSVLP
101: AFFVFGKASI NVSSCVKHLI DYASKSDKPI MILYGLEYAH VIPQIREELG LSKTDSQLSV ANVLCSFISP SKDPRESMEH PRPYSESDSS DSLSSSRSYR
201: LGGLTWDLPE GSKIEDYLLF WIGSDSSAFA NVVLTFNGCD IVRYDAEEDS LVTEFYQQRR ILKRRYYLVE KAKDANIIGI LVGTLGVAGY LHMIHHMQAL
301: ISAAGKKSYI LAMGRPNPAK LANFPECDVF IYISCAQTAL LDSKEFMSPV ITPFEANLAF SRGSEWTGAY LMHFQDVINS VKSESEAHIG SEEPRFSFFQ
401: GGYVEDHKTN DQAKNGEEDT GETMTLVQAA EKALQLRGND HNSLTKQTAA KSGPEYFLNR VYRGLEINSE NTLPEPYIVG RSGKASGYKH E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)