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AT1G72320.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32448230 (2020): nucleus nuclear matrix
  • PMID:32448230 (2020): nucleus nuclear matrix nucleolus
  • PMID:20214804 (2010): nucleus nuclear matrix
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pumilio 23
Curator
Summary (TAIR10)
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational
Description (TAIR10)
pumilio 23 (PUM23); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 376 Blast hits to 376 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 142; Plants - 69; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YSWCeggNOG:KOG2188EMBL:AC016529EMBL:AC067754
EMBL:AY035041EMBL:AY051073EMBL:BX815356EMBL:CP002684
EnsemblPlants:AT1G72320EnsemblPlants:AT1G72320.1entrez:843564Gene3D:1.25.10.10
GeneID:843564Genevisible:Q9C552GO:GO:0003723GO:GO:0005730
GO:GO:0006417GO:GO:0009744GO:GO:0009749GO:GO:0010252
hmmpanther:PTHR13102hmmpanther:PTHR13102:SF0HOGENOM:HOG000084845InParanoid:Q9C552
InterPro:IPR001313InterPro:IPR011989InterPro:IPR016024KEGG:ath:AT1G72320
KO:K14790OMA:TVACHRCPaxDb:Q9C552Pfam:Q9C552
Pfscan:PS50302PhylomeDB:Q9C552PIR:A96747PRIDE:Q9C552
PRO:PR:Q9C552PROSITE:PS50302ProteinModelPortal:Q9C552Proteomes:UP000006548
RefSeq:NP_177376.1RefSeq:NP_849878.2RefSeq:NP_974130.1SMART:SM00025
SMR:Q9C552STRING:3702.AT1G72320.1SUPFAM:SSF48371TAIR:AT1G72320
tair10-symbols:APUM23tair10-symbols:PUM23UniGene:At.24641UniProt:Q9C552
Coordinates (TAIR10) chr1:-:27228984..27232580
Molecular Weight (calculated) 84832.20 Da
IEP (calculated) 7.88
GRAVY (calculated) -0.50
Length 753 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSVGSKSLP SRRHRTIEED SLMGERGKSS NNHSERNKGM RRKDHKGNRG FDVDSSKKNQ SGGAPNVKPA SKKHSEFEHQ NQFVRKEIDP ETSKYFSEIA
101: NLFDSNEVEL EERSVICGNA LEETRGREYE IATDYIISHV LQTLLEGCEL DQLCSFIRNS ASVFPAIAMD RSGSHVAESA LKSLATHLEN PDAYSVIEEA
201: LHSICKVIVD NPLDMMCNCY GSHVLRRLLC LCKGVSLDSP ELYGAKSSKA LAKRLNLKMS QLDDNNLEIP HQGFPGMLTY LLSGLLSCSR EDMKYLQVDQ
301: YSSLVLQTAL RLMLKQDEQL LEIIPLILRC NSTNKKVEGF HIETNVAKEI LESMKDNSFS HLVEVILEVA PESLYNEMFN KVFKNSLFEL SVDRCANFVI
401: QALISHARDQ EQMGIMWEEL APRFKDLLEQ GKSGVVASLI AVSQRLQSHE NKCCEALVGA VCSTNESRIS ILPRLLFLDY YFGCRDKSTW EWAPGAKMHV
501: MGCLILQGIF KFSSDHIQPY ITSLTSMKAE YITETAKDSS GARVIEAFLA SDAATKQKRR LIIKLRGHFG ELSLHTSGSF TVEKCFDACN LTLREAIASE
601: LLDVKVDLSK TKQGPYLLRK LDIDGYASRP DQWKSRQEAK QSTYNEFCSA FGSNKSNFPK NTFVSDASED AAQEIEVKNT RKEIDHHPTS GFKRHREKHA
701: KDKDEPFAGE KRSKQKKNKT SEATDKPKLA GSKRPFLSGE MTGKNRHSNK MRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)