AT1G06670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nuclear DEIH-boxhelicase | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
nuclear DEIH-boxhelicase (NIH); CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Ankyrin repeat-containing domain (InterPro:IPR020683), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Single-stranded nucleic acid binding R3H (InterPro:IPR001374), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase in vascular tissue and tapetum (TAIR:AT2G30800.1); Has 26020 Blast hits to 16191 proteins in 1841 species: Archae - 22; Bacteria - 7563; Metazoa - 5966; Fungi - 2932; Plants - 1417; Viruses - 339; Other Eukaryotes - 7781 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:2040567..2047333 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 174519.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1576 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAKKKKDTKH TRLCEATGAW ATKVLEDFRA SGNDSYVFEQ QLTNSERGII HQMCRTMGLR SKSNGSGEER RLSLFKGDGI SKSDKRRMYE ARNQKEKEGD 0101: GISKSYSKHR YETRFQKAGG IRKTRISPKK LKCVSFPPEA KAVLHDLFTR YPPCDGDTTG TSLGIYTTGN VNSNWKDDFF KKPHMTKHDI ENNVVSLSSR 0201: LKKERHFREI FEARSKLPIA SFRDAIISAV ESNQVVLIAG ETGCGKTTQV PQYLLDHMWH SKKEACKIIC TQPRRISAIS VSDRISWERG ETIGRTVGYK 0301: VRLQSEGGRE SSVVFCTNGI LLRVLIGKGV NSSVPDITHI IVDEIHERDS YSDFMLMILR DLLPSNPHLR LILMSATLDA ERFSEYFGGC PVVRVPGFTY 0401: PVRTFFLDDA LSVLNSDKNS HLLSAVKRDF KDEDKVSLDE AIDLAWTNDE FDCLVDLVSS EGSHEAYNYQ NSTTGLTPLM VFAGKGRVSD VCKLLSVGAD 0501: CTLKSKEGIT ALELAEKENQ FETAQIIREH AGNIQSNSQQ AQDLLDKYMA TIKPEEVDVG LIVKLMKKIC SDSKDGAILV FLPGWEEISK TKEKLLDDRF 0601: FAHSAKFIIL CLHSRVPAEE QKKVFNRPPR GCRKIVLATN IAESAVTIDD VVYVIDSGRM KEKSYDPYND VSTLQSSWVS KANAKQRAGR AGRCQAGICY 0701: HLYSKLRAAS LPEYRVPEVM RMPVDELCLQ VKMLDPNCNV NDFLQKLMDP PVAQSIENAL IILKDIGALT PEEELTELGQ KFGQLPVHPR ISKMIYFAIL 0801: VNCLDPALIL ACAADEKDPF TMPLSPGDRK KAAAAKHELA SLYGDHSDHL ATVAAFQCWK NAKASGQAKE FCSKYFISQV VMKRLDDLCR KLQGELNRHG 0901: VIPSSSSNCS LNAHDPGILR AVIAVGLYPM LGRMCPLSKN RTRSVIETIA GAKVRVPSLS NNVDMSSTKF DEALIVFDEI TRGDWGVVIR SCTVLPTIPV 1001: LLFSREIAVS TTESYDAVKS DDEEDHKVGN VGDAMDIDKE VGRPGEKIML GPENSVKVVV DRWLPFKVTA FEIAQMYILR ERLMASILFK VKHPKENLPP 1101: HLGASMYAIA SVLSYDSLAQ SSVQTVAVQP ITSVVDATSP RDDIPSTNPN ELREHDPNTT PMGSKLELAN KLGLGNMEES LPSNFADGNE QPDPNTSPVE 1201: DVSAATKQKK MQSESKRCKS LNNVDLGNIE ENFGNMEENP PSDLAIGNEQ TLPKLASNLD MGNMEENTPS DLANGNEKTE PNSANSMDLG NMEENTPSDL 1301: ANGNKKKEPK SVSKLDLGSE KVSIPSNLVN GNEQHDLNIA PGEDASAAKQ PEKKRSRSKK RKSGNNLDLG KMEKSKPSDL ANENEQTEPK SANNLDLGNM 1401: KENTPSDLAN ENEQTELRLP NNSDYGNMEE SLPLNLANGD EQPDPTTAPM EAAKQPKKKR SRSKKCKSVN NLDLGNMEEN KPSDLANGNE QKDPESVNRL 1501: DPGKEKESIP SNLVSGNEQP DSNTAPAKKP KKKKRKLANN FDSVNNMEEK MPSTNVLSQG NKSGLIEEKP SIPSDQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)