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AT5G17930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MIF4G domain-containing protein / MA3 domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MIF4G domain-containing protein / MA3 domain-containing protein; FUNCTIONS IN: binding; INVOLVED IN: RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT1G80930.1); Has 15897 Blast hits to 11268 proteins in 674 species: Archae - 101; Bacteria - 729; Metazoa - 6896; Fungi - 1567; Plants - 651; Viruses - 76; Other Eukaryotes - 5877 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNNQeggNOG:KOG2141EMBL:AK176239EMBL:AK226805
EMBL:CP002688EnsemblPlants:AT5G17930EnsemblPlants:AT5G17930.1entrez:831661
Gene3D:1.25.40.180GeneID:831661GO:GO:0003723Gramene:AT5G17930.1
hmmpanther:PTHR18034hmmpanther:PTHR18034:SF4HOGENOM:HOG000029976InterPro:IPR003890
InterPro:IPR003891InterPro:IPR016021InterPro:IPR016024KEGG:ath:AT5G17930
KO:K17583ncoils:CoilOMA:KPACAKTPfam:PF02847
Pfam:PF02854Pfscan:PS51366PhylomeDB:Q67Z79PROSITE:PS51366
Proteomes:UP000006548RefSeq:NP_197295.2SMART:SM00543SMART:SM00544
STRING:3702.AT5G17930.1SUPFAM:SSF48371TAIR:AT5G17930UniGene:At.51059
UniProt:Q67Z79
Coordinates (TAIR10) chr5:-:5940131..5943952
Molecular Weight (calculated) 90011.90 Da
IEP (calculated) 7.25
GRAVY (calculated) -0.64
Length 784 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSRHEKRK EARLQKNQKK HESWLQRHKS EKEKRVSSSA SAQKSGDVIK SEDFRQISDS VTEHMESSSP SGNKDHGKSF IPKKEEVRVK SKEKKMQKVE
101: RIKDLNRPRK KTNFEEFLEM DTPTVISGDQ DAELERRLAK KLKIKKGKLR GMDDGLNDLF EGLPSVLDSM GSELGDSRKK RKKKRSEEKQ DHEDVDELAN
201: EDLEHEESEF SDEESEEEPV GKRDRKRHKK KKKSVDEELE SDLMNITDDG ESETVNYHDS PSSLEKVDTP LHERKPESSS KYVAPHLRSQ AKSESEELTK
301: MRTRIKGLLN KMAESNVETI TAELATIYRS VARSVSSQIF CEEVLTTYAR GNEQYAVFAS FIAGMACLVG MDFSAKLIAS LAKSFEDEYQ KEDSLSLNGI
401: SLLLSYLCIL GVCSSDLIYD FLMTLGKRLT KVDAFTITTV LDCCGMKIRS DDPLAMKTFI ISIQNKANEL KTSSDGQTQM NNMMMEKMLE TISAIKNNKL
501: RAKEDSVQNT RVKKWLQKLR VEEVLLRGLT WSKLLDPEKK GQWWLSGDLV VDSNTAEDIA ETMDAEVVEA QKMLKLAEAQ RMNTDSRKAI FCVIMSSEDY
601: IDAFEKLLRL DLPGKQDREI MRVLVECCLQ EKAFNKFYTV LASKLCEHDK NHKFTLQYCI WDHFKELESM SLQRSMHLAK FVAEIIVTFN LSLAVLKSVD
701: LANPVELTPK RIMHFRMLFE AIFEHPENLV WNLFTRIALN PEYEALRDGI KFFVKEYVVK NNKAIYGKFR KAKEALNNAE GLLM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)