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AT5G65900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEA(D/H)-box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G18600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2540-MONOMEREC:3.6.4.13eggNOG:COG0513eggNOG:KOG0342
EMBL:AB018108EMBL:AJ012745EMBL:AL021684EMBL:AY059930
EMBL:BT001188EMBL:CP002688EnsemblPlants:AT5G65900EnsemblPlants:AT5G65900.1
entrez:836719Gene3D:3.40.50.300GeneID:836719Genevisible:Q9SB89
GO:GO:0003723GO:GO:0004386GO:GO:0005524Gramene:AT5G65900.1
hmmpanther:PTHR24031hmmpanther:PTHR24031:SF301HOGENOM:HOG000268799InParanoid:Q9SB89
InterPro:IPR000629InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001
InterPro:IPR014014InterPro:IPR025313InterPro:IPR027417iPTMnet:Q9SB89
KEGG:ath:AT5G65900KO:K13179ncoils:CoilOMA:GVIVLCP
PaxDb:Q9SB89Pfam:PF00270Pfam:PF00271Pfam:PF13959
Pfam:Q9SB89Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195
PhylomeDB:Q9SB89PIR:T05883PIR:T51352PRIDE:Q9SB89
PRO:PR:Q9SB89PROSITE:PS00039PROSITE:PS51192PROSITE:PS51194
PROSITE:PS51195ProteinModelPortal:Q9SB89Proteomes:UP000006548RefSeq:NP_201391.1
scanprosite:PS00039SMART:SM00487SMART:SM00490SMART:SM01178
SMR:Q9SB89STRING:3702.AT5G65900.1SUPFAM:SSF52540TAIR:AT5G65900
UniGene:At.19658UniGene:At.66704UniProt:Q9SB89
Coordinates (TAIR10) chr5:+:26358328..26361244
Molecular Weight (calculated) 72056.40 Da
IEP (calculated) 9.30
GRAVY (calculated) -0.77
Length 633 amino acids
Sequence (TAIR10)
(BLAST)
001: MANLDMEQHS SENEEIKKKK HKKRARDEAK KLKQPAMEEE PDHEDGDAKE NNALIDEEPK KKKKKKNKKR GDTDDGEDEA VAEEEPKKKK KKNKKLQQRG
101: DTNDEEDEVI AEEEEPKKKK KKQRKDTEAK SEEEEVEDKE EEKKLEETSI MTNKTFESLS LSDNTYKSIK EMGFARMTQI QAKAIPPLMM GEDVLGAART
201: GSGKTLAFLI PAVELLYRVK FTPRNGTGVL VICPTRELAI QSYGVAKELL KYHSQTVGKV IGGEKRKTEA EILAKGVNLL VATPGRLLDH LENTNGFIFK
301: NLKFLVMDEA DRILEQNFEE DLKKILNLLP KTRQTSLFSA TQSAKVEDLA RVSLTSPVYI DVDEGRKEVT NEGLEQGYCV VPSAMRLLFL LTFLKRFQGK
401: KKIMVFFSTC KSTKFHAELF RYIKFDCLEI RGGIDQNKRT PTFLQFIKAE TGILLCTNVA ARGLDFPHVD WIVQYDPPDN PTDYIHRVGR TARGEGAKGK
501: ALLVLTPQEL KFIQYLKAAK IPVEEHEFEE KKLLDVKPFV ENLISENYAL KESAKEAYKT YISGYDSHSM KDVFNVHQLN LTEVATSFGF SDPPKVALKI
601: DRGGYRSKRE PVNKFKRGRG GGRPGGKSKF ERY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)