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AT4G25340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FK506 BINDING PROTEIN 53
Curator
Summary (TAIR10)
Encodes a member of the FKBP-type immunophilin family that functions as a histone chaparone. Binds to 18S rDNA and represses its expression.
Computational
Description (TAIR10)
FK506 BINDING PROTEIN 53 (FKBP53); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity, histone binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT5G05420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G25340-MONOMERBioGrid:13924EC:5.2.1.8eggNOG:COG0545
eggNOG:KOG0552EMBL:AL079350EMBL:AL161563EMBL:AY057543
EMBL:AY143978EMBL:CP002687EnsemblPlants:AT4G25340EnsemblPlants:AT4G25340.1
entrez:828637ExpressionAtlas:Q93ZG9GeneID:828637Genevisible:Q93ZG9
GO:GO:0000413GO:GO:0003755GO:GO:0005528GO:GO:0005634
GO:GO:0005730GO:GO:0005789GO:GO:0005829GO:GO:0006334
GO:GO:0042393GO:GO:0061077hmmpanther:PTHR10516hmmpanther:PTHR10516:SF292
HOGENOM:HOG000083819InParanoid:Q93ZG9InterPro:IPR001179InterPro:IPR023566
iPTMnet:Q93ZG9OMA:ANNAMSEPANTHER:PTHR10516PaxDb:Q93ZG9
Pfam:PF00254Pfam:Q93ZG9Pfscan:PS50059PhylomeDB:Q93ZG9
PIR:T10215PRIDE:Q93ZG9PRO:PR:Q93ZG9PROSITE:PS50059
ProteinModelPortal:Q93ZG9Proteomes:UP000006548RefSeq:NP_567717.1SMR:Q93ZG9
STRING:3702.AT4G25340.1SUPFAM:SSF54534SwissPalm:Q93ZG9TAIR:AT4G25340
tair10-symbols:ATFKBP53tair10-symbols:FKBP53UniGene:At.20903UniProt:Q93ZG9
Coordinates (TAIR10) chr4:-:12959657..12962632
Molecular Weight (calculated) 52225.40 Da
IEP (calculated) 4.66
GRAVY (calculated) -1.01
Length 477 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFWGLEVKP GKPQAYNPKN EQGKIHVTQA TLGTGLSKEK SVIQCSIGDK APIALCSLLP NKIECCPLNL EFDDDDEPVE FTVTGDRSIH LSGFLEYYQD
101: DEDDYEHDED DSDGIDVGES EEDDSCEYDS EEDEQLDEFE DFLDSNLERY RNAAAPKSGV IIEEIEDEEK PAKDNKAKQT KKKSQASEGE NAKKQIVAIE
201: GAHVPVLESE DEDEDGLPIP KGKSSEVENA SGEKMVVDND EQGSNKKRKA KAAEQDDGQE SANKSKKKKN QKEKKKGENV LNEEAGQVQT GNVLKKQDIS
301: QISSNTKAQD GTANNAMSES SKTPDKSAEK KTKNKKKKKP SDEAAEISGT VEKQTPADSK SSQVRTYPNG LIVEELSMGK PNGKRADPGK TVSVRYIGKL
401: QKNGKIFDSN IGKSPFKFRL GIGSVIKGWD VGVNGMRVGD KRKLTIPPSM GYGVKGAGGQ IPPNSWLTFD VELINVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)