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AT3G12340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At3g12340
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506 BINDING PROTEIN 53 (TAIR:AT4G25340.1); Has 13564 Blast hits to 11813 proteins in 1771 species: Archae - 96; Bacteria - 5418; Metazoa - 3305; Fungi - 956; Plants - 1045; Viruses - 29; Other Eukaryotes - 2715 (source: NCBI BLink).
Protein Annotations
EC:5.2.1.8eggNOG:COG0545eggNOG:KOG0552EMBL:AC069472
EMBL:AC069474EMBL:AP002047EMBL:CP002686EMBL:DQ487560
EnsemblPlants:AT3G12340EnsemblPlants:AT3G12340.1entrez:820412GeneID:820412
Genevisible:F4J9Q6GO:GO:0003755GO:GO:0006457Gramene:AT3G12340.1
hmmpanther:PTHR10516hmmpanther:PTHR10516:SF292HOGENOM:HOG000083819InParanoid:F4J9Q6
InterPro:IPR001179InterPro:IPR023566iPTMnet:F4J9Q6KEGG:ath:AT3G12340
KO:K14826OMA:EISIKEMPANTHER:PTHR10516PaxDb:F4J9Q6
Pfam:F4J9Q6Pfam:PF00254Pfscan:PS50059PRIDE:F4J9Q6
PRO:PR:F4J9Q6PROSITE:PS50059ProteinModelPortal:F4J9Q6Proteomes:UP000006548
RefSeq:NP_187840.7SMR:F4J9Q6STRING:3702.AT3G12340.1SUPFAM:SSF54534
TAIR:AT3G12340UniGene:At.63535UniProt:F4J9Q6
Coordinates (TAIR10) chr3:-:3925720..3929346
Molecular Weight (calculated) 55180.80 Da
IEP (calculated) 7.47
GRAVY (calculated) -0.87
Length 499 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFWGVEVKP GKTFTLKNNE ATGIRRLHLS QATLGHGTAT NRSILQCNVG NKSPLLLCVL TPDKVDSCQL NLEFEETDEV IFSVIGPRSV HLTGYFLGRS
101: TGFRPNDDES ESFGEDIVDT DMEKGSSDDY DYSDSFINDD DPAVRGSHVS STDDDEISIK EMTAKTKEKK KNGKGRRLRK KFQVSDSDSD ETSARADESS
201: NEDSVEVLNN GNEPKIAKVH SSESPLPSRV TRSKARKSTL ESGEPAKCEK TFEAKINTHK TLDNREDKPL DDAKLSPVQK DCEILSKKKR NKERSKSSAI
301: IIDSDDGEGK NMPESLQNEN PVSDKGIKSS SDVLLSQNGD ATLSKKKKKR DRREETTDVP ECPEKKKQAI DKNIEKEAGT KKPLETRTLS NGVIIEDIEK
401: GKLDGKSAVK GKKVSILYTG KLKDTGNLFD SNLGEDPLRF RLGGENVIEG LSIGVEGMRV GDKRRLIIPP ALGYSKRGLK EKVPKSAWLV YEVEAVKIR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)