suba logo
AT1G13030.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sphere organelles protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
sphere organelles protein-related; Has 14464 Blast hits to 9695 proteins in 837 species: Archae - 14; Bacteria - 1320; Metazoa - 4989; Fungi - 1376; Plants - 652; Viruses - 103; Other Eukaryotes - 6010 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IV9MeggNOG:ENOG410ZKQAEMBL:AC007357EMBL:AY093028
EMBL:AY128933EMBL:CP002684EnsemblPlants:AT1G13030EnsemblPlants:AT1G13030.1
entrez:837860GeneID:837860Genevisible:Q8RWK8GO:GO:0015030
GO:GO:0030619GO:GO:0030620Gramene:AT1G13030.1hmmpanther:PTHR15197
hmmpanther:PTHR15197:SF0HOGENOM:HOG000090816IntAct:Q8RWK8InterPro:IPR024822
InterPro:IPR031722iPTMnet:Q8RWK8KEGG:ath:AT1G13030KO:K13150
OMA:EMLAIEYPANTHER:PTHR15197:SF0PaxDb:Q8RWK8Pfam:PF15862
PhylomeDB:Q8RWK8PIR:C86264PRO:PR:Q8RWK8ProteinModelPortal:Q8RWK8
Proteomes:UP000006548RefSeq:NP_172762.2STRING:3702.AT1G13030.1TAIR:AT1G13030
UniGene:At.11249UniProt:Q8RWK8
Coordinates (TAIR10) chr1:-:4444284..4447278
Molecular Weight (calculated) 68670.40 Da
IEP (calculated) 5.50
GRAVY (calculated) -0.92
Length 608 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV
101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV
201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID
301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA
401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA
501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN
601: YLRSQKEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)