AT1G13030.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : sphere organelles protein-related | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
sphere organelles protein-related; Has 14464 Blast hits to 9695 proteins in 837 species: Archae - 14; Bacteria - 1320; Metazoa - 4989; Fungi - 1376; Plants - 652; Viruses - 103; Other Eukaryotes - 6010 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:4444284..4447278 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 68670.40 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.50 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||||||||||||||
Length | 608 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEEEKVRVRL VFEDRRILSK YQKKQGLTRS WVVLNRKCHR TISEFSDHIF HTFSLCEACP HGLSLSMEGF VLPPFESSCV LKDKDIVCVK KKKESLLEIV 101: GEDSDENVYN AIEVEERPQI RPGEMLLANE EFQKETGGYE SESEEDELEE EAEEFVPEKK ASKKRKTSSK NQSTKRKKCK LDTTEESPDE RENTAVVSNV 201: VKKKKKKKSL DVQSANNDEQ NNDSTKPMTK SKRSSQQEES KEHNDLCQLS AETKKTPSRS ARRKKAKRQW LREKTKLEKE ELLQTQLVVA PSQKPVITID 301: HQATKEKHCE TLENQQAEEV SDGFGDEVVP VEVRPGHIRF KPLAGTDEAS LDSEPLVENV LWNGNMTKKK GQKWGTEKSG FSKRYAQDFN EDATTQPAEA 401: ETLANCPIDY EQLVAYTGSV KKGDVIAYRL IELTSSWTPE VSSFRVGKIS YYDPDSKMVT LMPVQEFPIE KKTEEDDDFC MQPDTSLYKE DGSLEIEFSA 501: LLDVRSVKTS SSDSAEVAKS ALPEPDQSAK KPKLSANKEL QTPAKENGEV SPWEELSEAL SAKKAALSQA NNGWNKKGSS SGGSWSYKAL RGSAMGPVMN 601: YLRSQKEI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)