suba logo
AT3G15080.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1777 Blast hits to 1777 proteins in 250 species: Archae - 0; Bacteria - 24; Metazoa - 732; Fungi - 619; Plants - 217; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1104-MONOMEReggNOG:COG0847eggNOG:KOG2249EMBL:AK228883
EMBL:AY087954EMBL:BT024904EMBL:CP002686EMBL:EU682310
EnsemblPlants:AT3G15080EnsemblPlants:AT3G15080.1entrez:820738Gene3D:3.30.420.10
GeneID:820738GO:GO:0003676GO:GO:0004527GO:GO:0016740
Gramene:AT3G15080.1hmmpanther:PTHR12801HOGENOM:HOG000182422InterPro:IPR012337
InterPro:IPR013520KEGG:ath:AT3G15080KO:K18327ncoils:Coil
OMA:NPSETENPfam:PF00929PhylomeDB:Q8LAA0Proteomes:UP000006548
RefSeq:NP_566499.1SMART:SM00479SMR:Q8LAA0STRING:3702.AT3G15080.1
SUPFAM:SSF53098TAIR:AT3G15080UniGene:At.39112UniProt:Q8LAA0
Coordinates (TAIR10) chr3:+:5074319..5076327
Molecular Weight (calculated) 31127.60 Da
IEP (calculated) 10.65
GRAVY (calculated) -0.86
Length 275 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSDLKRKPK KKITPKPVQL NPNWSLLQQK LKSDSHGNTR KSSNPENPSS ILGKRKERPD SEVDVPKINP LAPVNDDSSL TDEVAMDCEM VGVSQGTKSA
101: LGRVTLVNKW GNVLYDEFVR PVEHVVDFRT SISGIRPRDL RKAKDFRVAQ TKVAELIKGK ILVGHALHND LKALLLTHPK KDIRDTGEYQ PFLKGKTRKS
201: LKHLASEILG ADIQNGEHCP IDDARAAMML YQKNRKEWEK TVKDQTRMWL KQKKRKPKKK AKYGNNASTN DNPIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)