AT5G19300.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:6495593..6497987 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44882.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.45 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||
| Length | 398 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKKNKRSQD ESELELEPEL TKIIDGDSKK KKNKNKKKRS HEDTEIEPEQ KMSLDGDSKE EKIKKKRKNK NQEEEPELVT EKTKVQEEEK GNVEEGRATV 101: SIAIAGSIIH NTQSLELATR LAGQIARAAT IFRIDEIVVF DNKSSSEIES AATNASDSNE SGASFLVRIL KYLETPQYLR KSLFPKQNDL RYVGMLPPLD 201: APHHLRKHEW EQYREGVTLS EKAPNSEGTL VDVGLSKSVV VDQVLGPGIR VTVAMGTDHD LDLVRQIVPP SKPREEAGMY WGYKVRYASQ LSSVFKECPF 301: EGGYDYLIGT SEHGLVISSS ELKIPTFRHL LIAFGGLAGL EESIEDDNQY KGKNVRDVFN VYLNTCPHQG SRTIRAEEAM FISLQYFQEP ISRAVRRL |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)