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AT4G19610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleotide binding;nucleic acid binding;RNA binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleotide binding;nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G08695.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQZ5eggNOG:KOG0110EMBL:CP002687EnsemblPlants:AT4G19610
EnsemblPlants:AT4G19610.1entrez:827703Gene3D:3.30.70.330GeneID:827703
GO:GO:0000166GO:GO:0003676GO:GO:0005730Gramene:AT4G19610.1
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF477InParanoid:F4JT92InterPro:IPR000504
InterPro:IPR003954InterPro:IPR012677iPTMnet:F4JT92KEGG:ath:AT4G19610
KO:K14787OMA:FAFVGFRPaxDb:F4JT92Pfam:PF00076
Pfscan:PS50102PRIDE:F4JT92PROSITE:PS50102ProteinModelPortal:F4JT92
Proteomes:UP000006548RefSeq:NP_193696.3SMART:SM00360SMART:SM00361
SMR:F4JT92STRING:3702.AT4G19610.1SUPFAM:SSF54928TAIR:AT4G19610
UniGene:At.50354UniProt:F4JT92
Coordinates (TAIR10) chr4:+:10677482..10681623
Molecular Weight (calculated) 91568.90 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.78
Length 816 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRICVKNLP KHVKEDQLRD HFSQKGEITD AKLMRSNDGK SRQFGFIGFR SAQEAQQAIK YFNNTYLGTS LIIVEIAHKV GDENAPRPWS RLSHKKEEEA
101: KKSSSEGLKD GNAKGGKKRK AEVDDPEFQE FLEVHQRSKS KIWSNDMSIP PAPEETGKEK VLVKKADEQI VSNGVEPKKA KKSSDTEKTK KSKVVAASDD
201: VSDMEYFKSR IKKNLSDSES DNESEDSSED EAGDDDGKAE TDGQDADIRY FPIDGDVEAG GVGKDDDGDA MEVEGDGKVA QESKAVSDDV LDTGRLFVRN
301: LPYTATEEEL MEHFSTFGKI SEVHLVLDKE TKRSRGIAYI LYLIPECAAR AMEELDNSSF QGRLLHILPA KHRETSDKQV NDTSNLPKTF KQKREEQRKA
401: SEAGGDTKAW NSLFMRPDTI LENIVRVYGV SKSELLDREA EDPAVRLALG ETKVIAETKE ALAKAGVNVT SLEKFATRNG DEKNRSKHIL LVKNLPFAST
501: EKELAQMFGK FGSLDKIILP PTKTMALAVF LEPAEARAAL KGMAYKRYKD APLYLEWAPG NILEPKNLPD TNEERSDIEE NGVRRVNLEQ QVEIDPDVTE
601: SNVLNVKNLS FKTTDEGLKK HFTKLVKQGK ILSVTIIKHK KNEKYLSSGY GFVEFDSVET ATSVYRDLQG TVLDGHALIL RFCENKRSDK VGKDSNKDKP
701: CTKLHVKNIA FEATKRELRQ LFSPFGQIKS MRLPKKNIGQ YAGYAFVEFV TKQEALNAKK ALASTHFYGR HLVLEWANDD NSMEAIRKRS AAKFDEENDN
801: ARKRKSSKAV EGKNEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)