AT1G17690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6082878..6088157 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86924.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.25 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||||||||||
| Length | 754 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAPNATGVLK RHRSHEKFDK KRDTKKHKHV EKTIVSNPST DSPEESSIEA ESEAMVYREP TQYQNLLVSL GSSNKVVADM NKRRQREEEG KSDTEEDEDD 101: EDEDEEENSG SDDLSSTDGE DDKSQGDDQE TLGGLTDDTQ EDNDNQSEEE DPDDYETDEE VHELSTNGQS FVDASSSISA FSEHLSHKLS SEEVETLPKG 201: KWKFKWESPA FDMPNCKWKG TSENFLDGIQ SDAPYGLKPK LYNHWLQLYK KCGGKDLDSS KRRKFFSICN SYLDILHSNK KPFYHCGSDE DSSAMDAYLM 301: HSLNHIFKTR DLVKKNESKI AKHRETSEEE ILSDDGFLDQ GFTRPKVLIL LPLRSIAFRV VKRLIQLTPE SQRVNVEHLD RFNDEFGCEE DTDDCDGEKT 401: TSKNGNSIKQ KSSKPSDWQA LFGANNNDDE FMLGIKHTRK SIRLYGDFYS SDIIVASPLK LHMAIGAAEE NKERDVDYLS SIEVLVIDHA DIISMQNWSF 501: LATVVDYLNR LPTKQHGTNV MRIRPLYLDG HARFYRQSII LSSYLTPEMN SLFGRHCLNY KGKMKMACEY KGVLEKVLLP VRQIYERFDA ASITQVDDAR 601: LEYFTKKIFP KIKDSVQGGV MIFIHSYFEF VRLRNFLNTQ NTSFCLLGDY AKNADISRAR EQFFVGSRKI MLYTERAYFY KRYKIRGIKN LILYSLPERK 701: EFYPEIMNML EEGSHDMMST ALFSRFDMLQ LERIVGSTSA KRMITSEKNM FAFC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)